Microbiome Research
@SunagawaLab
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Microbiome Research Lab at the Institute of @Microbio_ETH Zurich | Tweets by lab members
Zürich, Switzerland
Joined March 2019
The mOTUs4 genome database: 2.83Mio systematically reconstructed MAGs and >900K isolate and single cell-assembled genomes, all clustered into 124K species-level clusters. Paper out at @NAR_Open:. 1/5.
academic.oup.com
Abstract. Determining the taxonomic composition (taxonomic profiling) is a fundamental task in studying environmental and host-associated microbial communi
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Great to see this study out that members of our lab contributed to: systemic immune activation (through lipopolysaccharides) promotes 100-10,000 fold expansion of opportunistic pathogens in the mouse gut -
nature.com
Nature Communications - Acute systemic immune activation may affect gut-luminal colonisation dynamics. Here, the authors show that LPS exposure in mice elevates gut-luminal oxygen species levels,...
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Check out this interview with @PietroTedesco on the work that he is contributing to #BlueRemediomics - an EU horizon Project that we are also a part of!.
🎙️🔬We spoke with #BlueRemediomics researcher @PietroTedesco from @SznDohrn who focuses on identifying #compounds & #enzymes with high potential for pharma or cosmeceutical applications. 📹 Watch the video with Pietro below!. 👉 Read the interview here:
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RT @andreaskeppler: Incredibly happy and grateful to see this major part of my PhD thesis published. Thanks to all collaborators!.@pfeilmes….
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Last week we hosted a group of schoolchildren in our lab to discover environmental microbes during the National Future Day @Zukunftstag at @ETH_en. We had a lot of fun isolating bacteria and fungi and studying them under the microscope
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Letzte Woche war eine Gruppe von Schulkindern in unserem Labor auf Spurensuche nach Umweltmikroben während des Nationalen @Zukunftstag an der @ETH_en. Wir hatten viel Spass beim Isolieren von Bakterien und Pilzen und beim Programmieren von ihrem eigenen Bild.
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Congratulations to @marija_dmit, @hjruscheweyh, @Samuel_BIO2810, @aasintsova, @pangenomics, and @ZellerGroup 🎉. 5/5.
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Users can interactively search, query, and download sequence data from genomes and mOTUs on the database website:. 4/5.
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The species-level taxonomic units (mOTUs) have been annotated using GTDB taxonomy and are available for taxonomic profiling using the mOTUs4 tool:. 3/5.
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MAGs were reconstructed 118K metagenomic samples from over 70 different environments using a standardized workflow, which includes multi-sample coverage information for binning scaffolds. 2/5
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RT @merenbey: This work is here thanks to @emily_fogarty11, whose dedication turned a surprising observation into a piece of science. But….
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RT @merenbey: A reminder for ECRs who are looking for an opportunity to form their own group to study contemporary questions in marine scie….
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RT @NCCRMicrobiomes: New computational tools from @SunagawaLab @NCCRMicrobiomes 👏.mBARq: a versatile and user-friendly framework for the an….
biorxiv.org
DNA barcoding has become a powerful tool for assessing the fitness of strains in a variety of studies, including random transposon mutagenesis screens, attenuation of site-directed mutants, and...
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RT @ChristianRinke: I'm excited to share that I've accepted a position as Professor for #environmental #microbiology at @uniinnsbruck in A….
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RT @ETH_DBIOL: Predicting interactions in plant microbiomes made possible. Metabolic modelling sheds light on bacterial interactions in pla….
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RT @jcamthrash: We're hiring for a postdoc position focused on metabolic modeling. Please share widely.
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RT @HIFMB_OL: The huge success of #HIFMBsymposium's session 3 on the multi-data matrix behind functional biodiversity are attributed to: L….
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RT @noort_zuit: So many creative ideas and forward looking plans at the 2nd symposium on federating bioinformatics tools and resources last….
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📣Open postdoc position📣 in our group.@Microbio_ETH to work on marine protist-microbe interactions. Lots of opportunities for networking! See job ad for details:.
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