Daniel Mende
@pangenomics
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Project Professor at the Bio2q, Keio University, Tokyo, Japan previously @EMBL, UofHawaii and Amsterdam UMC
Amsterdam, The Netherlands
Joined March 2011
RT @svetlana_up: New #MicrobiomeDigest is OUT - infant gut / @pangenomics.- gut-brain / @JohannaJoyce_.- PHLAME /….
microbiomedigest.com
Check out my list of selected latest microbiome studies and see you next week at #MVIF! Gut microbiome Gut microbiota-derived hexa-acylated lipopolysaccharides enhance cancer immunotherapy response…
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RT @bio2qkeio: The 3rd Keio University WPI-Bio2Q International Symposium. Thursday, March 6th, 13:00-18:00 .Friday, March 7th, 10:00-15:00….
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RT @PucciNicholas: Thrilled to share the 1st publication of my PhD in @thePeerJ ! A collaboration with @amsterdamumc & @GGDAmsterdam, we s….
peerj.com
Background The initial colonization of the infant gut is a complex process that defines the foundation for a healthy microbiome development. Bifidobacterium longum is one of the first colonizers of...
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RT @ewanbirney: If you are a scientist or science-curious, I really recommend Bluesky (a) lots of scientists there, happily posting away (b….
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RT @SunagawaLab: The mOTUs4 genome database: 2.83Mio systematically reconstructed MAGs and >900K isolate and single cell-assembled genomes,….
academic.oup.com
Abstract. Determining the taxonomic composition (taxonomic profiling) is a fundamental task in studying environmental and host-associated microbial communi
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RT @jcamthrash: mOTUs online database provides web-accessible genomic context to taxonomic profiling of microbial communities https://t.co/….
academic.oup.com
Abstract. Determining the taxonomic composition (taxonomic profiling) is a fundamental task in studying environmental and host-associated microbial communi
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RT @heimbergecon: Richest five families in Florence 🇮🇹 from 1427 are still the richest today (archival data). Not only the top shows persis….
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RT @AlexJProbst: Are you a data creator/user in #metagenomics or other #omics? We’re working on standards for fair data reuse and would li….
docs.google.com
This survey will inform a manuscript titled “A roadmap for fair reuse of public microbiome data”, the abstract of which and core figure (Figure 1) are included below. The manuscript in its current...
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RT @Fullam_Anthony: GUNC v1.0.6 has just been released! This version is a minor release with some small bugfixes and a fix for compatibilit….
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Congrats Ed and crew! Looking forward to reading it!.
Planktonic microbial signatures of sinking particle export in the open ocean’s interior
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RT @jcamthrash: Planktonic microbial signatures of sinking particle export in the open ocean’s interior
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Congrats to the whole an'vio team and thanks (again) for this great tool! Only downside: we have to update now ;).
🚨 #anvio v8 (marie) is out 🚨. This version includes new toys for integrated studies of microbial metabolism, genomic inversions, & phylogeography of proteins among many fixes and improvements. Release notes:. Installation page:.
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RT @PucciNicholas: Presenting my work on Bifidobacterium longum abundance dynamics in the #infant gut at the #EESMicrobiome poster presenta….
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RT @BioMickWatson: It's finally here! Our new paper in Nature Methods:. A comparison of single-coverage and multi-coverage metagenomic binn….
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RT @SunagawaLab: 📣Open postdoc position📣 in our group.@Microbio_ETH to work on marine protist-microbe interactions. Lots of opportunities f….
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We are looking for a postdoc! .Be part of a great team and a project that could make a difference! .
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RT @jcamthrash: Microbial and Viral Genome and Proteome Nitrogen Demand Varies across Multiple Spatial Scales within a Marine Oxygen Minimu….
journals.asm.org
The genomes of marine microbes can be shaped by nutrient cycles, with ocean-scale gradients in nitrogen availability being known to influence microbial amino acid usage. It is unclear, however, how...
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RT @AnaRitaBrochad1: Super happy to share the first preprint of the lab! Cool link between antibiotics and the CBASS antiphage defence syst….
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RT @_RodriguezGijon: Blaming peer scientists and not the companies does not help at all. If we really want to change this abusive system we….
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Congrats to all #ERCCoG recipients! Scrolling a bit on here showed all kinds of inspiring projects, looking forward to reading and hearing about the results!.
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