Sakcham
@SakchamB17
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Research Fellow at EMBB research group SCELSE, CEE NTU
Nanyang
Joined September 2016
geneSTRUCTURE: A Modern Platform for Visualization of Gene Structures https://t.co/bJ969VXXy8 🧬💻🧪 https://t.co/5BTi3grAwo
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Easily visualize flows in categorical data with the R package parcats. It lets you build interactive parallel category plots to explore how categories change across stages or time points. Built on plotly, fully interactive, and works well with tidy data. Ideal for: ✔️
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Big update for #gbdraw! - Multi-record circular plots: Genomes with multiple replicons can now be displayed in a single view! - Advanced linear plots: Focus on regions of interest with granular control over feature selection and color-coding! Try now: https://t.co/ahqoRxbDHT
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Protein–protein interactions (PPIs) are key to discovering and interpreting new biological functions. We’re excited to introduce 𝑭𝒍𝒂𝒔𝒉𝑷𝑷𝑰: a new application of gLM2 that uses genomic language modeling to predict proteome-wide PPIs in microbial genomes in minutes.
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📢 Our paper is now out in @ISMEJournal! 🦠 What happens when a pathogen population is genetically diverse AND under antibiotic pressure? TL;DR #AMR is a community effort! #Pseudomonas aeruginosa
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A major work from our lab is out in Science! @ScienceMag, another key step towards a true demonstration of RNA self-replication. https://t.co/2Fe8XonYst (1/6)
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Scikit-bio: a fundamental Python library for biological omic data analysis https://t.co/zRqpOMzXtR
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MicrobTiSDA: A flexible R package for inferring interspecies interactions and abundance dynamics in microbiome time-series data https://t.co/P6Q4xouIlD
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Bacteriophages mobilize bacterial defense systems via lateral transduction
science.org
Bacteriophages and PICIs spread bacterial defenses via lateral transduction, shaping microbial immunity and pathogen evolution.
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Visualizing pairwise genome comparisons? No need to run BLAST separately anymore! 🧬 #gbdraw has implemented #LOSAT, a WASM-powered Rust reimplementation of BLASTN/TBLASTX. ✅ No local installation ✅ No data transfer (Serverless) Try it here: https://t.co/ahqoRxbDHT
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Keystone concept revisited: insights into microbial community dynamics and control | Nature Reviews Microbiology
nature.com
Nature Reviews Microbiology - In this Perspective, Garza et al. revisit the keystone concept and discuss its relevance for microbial keystone taxa and functions. For this, they explore the...
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Molecular mechanisms of antibiotic resistance revisited | Nature Reviews Microbiology ( https://t.co/61Zm89RlXy)
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We're thrilled to announce SeqHub, an AI-enabled platform for biological sequence analysis. SeqHub brings together sequence search, genome annotation, and data sharing in one place. I dreamed of a single place where I could learn everything about my sequences. Today, a much more
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Two group leader positions available in the broader areas of RNA science, RNA technologies, and RNA medicine. Attractive packages and a great environment. Come and join us at Helmholtz RNA Würzburg, Bavaria.
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Gene-Set Enrichment Analysis and visualization on the web using EnrichmentMap: RNASeq. #GSEA #WebTool #RNAseq @BioinfoAdv
https://t.co/NGilNskfQi
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PEANUT: Pathway Enrichment Analysis through Network Utilization. #PathwayEnrichment #Bioinformatics
https://t.co/nRrInGLg5R
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My team at ATCC is growing! New #bioinformatics position! More to come too! If you’re an early career bioinformatics professional, have a passion for #genomics standards, quality and scientific reproducibility - then take a look!🧬🖥️ 🧫🦠🔬🚀 Let’s go!
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Gene-Set Enrichment Analysis and visualization on the web using EnrichmentMap: RNASeq. #GeneSetEnrichmentAnalysis #WebTool #Bioinformatics @BioinfoAdv
https://t.co/NGilNskfQi
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Eukfinder: a pipeline to retrieve microbial eukaryote genome sequences from metagenomic data | mBio
journals.asm.org
Advancements in next-generation sequencing have made whole-genome shotgun (WGS) metagenomic sequencing an efficient method for de novo reconstruction of microbial genomes from various environments....
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It’s no surprise that large language models like ChatGPT are helpful for coding. What makes gptstudio stand out is how it brings that help directly into RStudio through a clean, user-friendly add-in. gptstudio is an R package that integrates ChatGPT into RStudio, allowing you to
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