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Christa Caggiano Profile
Christa Caggiano

@ChristaCaggiano

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bioinformatics PhD 🧬

Manhattan, NY
Joined December 2011
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@ChristaCaggiano
Christa Caggiano
1 month
Extremely happy to see the last paper of my PhD published, which focused on using cell-free DNA to detect and monitor ALS worked with an amazing cross-continent team, which was co-led by Noah Zaitlen and @FleurryG https://t.co/8p8AYArmwi
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link.springer.com
Background Cell-free DNA (cfDNA), derived from dying cells, has demonstrated utility across multiple clinical applications. However, its potential in neurodegenerative diseases remains underexplored,...
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@ChristaCaggiano
Christa Caggiano
3 months
This is the last week to take our survey! If you're an early career researcher in human genetics and have some time, please consider taking our survey on how you use population descriptors It's a study run by trainees with the goal of improving trainee research quality!
@ChristaCaggiano
Christa Caggiano
6 months
Are you an early-career researcher working on the computational analysis of population-level human genetics data? We want to hear from you about if, how, and why you use population descriptors in your research! Fill out our short survey: https://t.co/7K4Ro23Bsq
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@ChristaCaggiano
Christa Caggiano
6 months
Are you an early-career researcher working on the computational analysis of population-level human genetics data? We want to hear from you about if, how, and why you use population descriptors in your research! Fill out our short survey: https://t.co/7K4Ro23Bsq
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@ChristaCaggiano
Christa Caggiano
5 months
If you are a trainee in genetics and have 10 minutes of time today/feel like procrastinating, please take our survey. This project is completely trainee led, and we want to get as broad of a perspective on how trainees are doing this research as possible!
@ChristaCaggiano
Christa Caggiano
6 months
Are you an early-career researcher working on the computational analysis of population-level human genetics data? We want to hear from you about if, how, and why you use population descriptors in your research! Fill out our short survey: https://t.co/7K4Ro23Bsq
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@doctorveera
Veera Rajagopal 
6 months
A powerful alternative to principal components (PC) to account for population structure in genetic association analysis: spectral components (SPc) Compared to PC, SPc - explain more variation in population structure with fewer components (90% for SPc vs 50% for PC) - more
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@ChristaCaggiano
Christa Caggiano
6 months
Are you an early-career researcher working on the computational analysis of population-level human genetics data? We want to hear from you about if, how, and why you use population descriptors in your research! Fill out our short survey: https://t.co/7K4Ro23Bsq
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@ChristaCaggiano
Christa Caggiano
1 year
Hi academic friends! Does anyone have a recent-ish NIH F32 that they would be willing to share? I can’t find any online written within 10 years, but I’d be super appreciative if anyone has an example 🙂
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@benbfly
Ben Berman
1 year
Check out our new toolkit for cell type deconvolution from DNA methylation sequencing. Open-source and ready to use! Congrats to @UntIrene who worked tirelessly on this & thanks to @ChristaCaggiano and Noah Zaitlen who inspired us with the CelFiE approach. https://t.co/2CAyX2dHgU
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genomebiology.biomedcentral.com
Deconvolution methods infer quantitative cell type estimates from bulk measurement of mixed samples including blood and tissue. DNA methylation sequencing measures multiple CpGs per read, but few...
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@doyouseewhy
Chloe Yap
1 year
How do quantities of brain cells – the fundamental unit of life – differ in Alzheimer’s disease, schizophrenia and autism? Our work on cell-type proportion shifts using methylomics is just out in @ScienceAdvances #PsychENCODE @mikejg84 @DanielVo10 https://t.co/jQDDlQKPau 🧵
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science.org
Analysis of cell-type composition from 1270 brains across three diagnoses implicates endothelial cell loss in Alzheimer’s disease.
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@ChristaCaggiano
Christa Caggiano
2 years
So happy to have been at the beautiful UPitt for the inaugural #statgen2024. Super fun conference with lots of cool stat gen methods, definitely a new fave
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@ChristaCaggiano
Christa Caggiano
2 years
Our paper looking at cell-free DNA epigenetic features in ALS is now out in MedRxiv! I am extraordinarily grateful for the ALS patients who participated in the study. This research would not be possible without them
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medrxiv.org
Cell-free DNA (cfDNA) is increasingly recognized as a promising biomarker candidate for disease monitoring. However, its utility in neurodegenerative diseases, like amyotrophic lateral sclerosis...
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@ChristaCaggiano
Christa Caggiano
2 years
Really wonderful work on how our genomes might interact with commonly prescribed medications
@sadowskimich
Michal Sadowski
2 years
New preprint. In this paper we quantify heritability of drug response and identify involved genes by applying gene-environment interaction methods to biobank data. https://t.co/mXvNhg8ksY 1/4
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@dr_andrealove
Andrea C. Love, PhD
2 years
I noticed ppl disregarding the NYMag piece bc it focused on Huberman’s personal life, not bad science & harmful misinformation he propagates. So I wrote a thing. @slate: “So, Should You Trust Andrew Huberman?” https://t.co/Yp7kiLJvax
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slate.com
He recommends supplements. He’s iffy on the flu shot. And more.
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@ChristaCaggiano
Christa Caggiano
2 years
Nothing makes me as uneasy as a human geneticist as seeing the proliferation of direct to consumer polygenic risk score companies. I know academics are conservative but these scores are truly not good enough yet & have potential for true harms
@KianSadeghi5
Kian Sadeghi
2 years
Introducing Nucleus, the health platform for your DNA. After 1,404 days of building, I’m proud to say @Nucleusgenomics provides the most complete look into your genetic risk for diseases that's ever been available. https://t.co/NxrRytWMcz Optimize your health by starting at
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@toniboltz
Toni Boltz
2 years
so happy to see our work out in AJHG! 😊 a great collaboration during my PhD in Roel Ophoff’s lab, working with @TommerSchwarz @bpasaniuc @kangchenghou @ChristaCaggiano (and many others not on twitter) check it out!👇
@GeneticsSociety
ASHG
2 years
To interpret the underlying biology of brain-specific disease susceptibility, the latest @AJHGNews article from @toniboltz et al. suggests computational approaches to a large sample with blood-based bulk RNA-seq. Learn more: https://t.co/i2PlCkheTZ #ASHG #geneticsdiscoveries
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@ChristaCaggiano
Christa Caggiano
2 years
The only time I’ve been called Dr since getting my PhD has been the place I order pizza from in a promotional marketing gimmick
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@elhamazizi
Elham Azizi
2 years
“The Iranian regime will, one day, fall. And when it does, women and men will regain their lives and their freedoms.” @TheLancet #WomanLifeFreedom #زن_زندگى_آزادى‌
@TheLancet
The Lancet
2 years
A year ago, Mahsa Amini died after being arrested and tortured for allegedly breaking Iran’s mandatory hijab law. Mass protests ensued. @richardhorton1 writes about events since, doctors implicated in human rights abuses, and the intersection of health and women’s rights. /2
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@ChristaCaggiano
Christa Caggiano
2 years
?? happy to hear this company finds that measuring gene expression via RNA is better than DNA, will definitely be giving them my $200 a month!
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