Marco Catoni
@CatmaCator
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Lecturer in Plant Biology at @unibirmingham , studying transposable element activation, #epigenetics and genome plasticity in #plants!
Birmingham, England
Joined June 2016
New fresh work from @Katie_JC in the lab! The supporting manuscript to our @Bioconductor packadge #mobileRNA is available on @biorxivpreprint! This describes an original approach for the analysis of mobile RNA molecules in #plant #grafting!.
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RT @leandroquadrana: Very excited to see our paper finally out @NaturePlants ! .The manuscript is fully accessible from here: https://t.co….
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RT @ELunaDiez: New pre-print alert! 📢 A comprehensive study on chemical-induced priming in oak seedlings. Led by @RosaSanchezLuc1 & Jack Bo….
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For who want to try it, #mobileRNA is a freely available and easy to use R tool available on @Bioconductor:.
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and a much more reliable estimation of transcript accumulation:
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In several simulated examples, both intra and extra-species combinations, we found that this approach results in a dramatic reduction of the noise and virtually not false positives.
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In the analysis of graft-mobile RNA molecules (small RNA and transcripts) in #heterografting conditions involving two #genotypes, we merge the two genomes involved into a single reference before the alignment step.
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I was honored to speak at #ICAR2024SanDiego about epiRILs in #arabidopsis and what we can still learn from them about epigenetic regulation and #transposable_elements mobilisation! Thank you Jungnam Cho for arranging such as amazing session!
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RT @GomollonSara: Fantastic first day at @SEBiology conference! And my talk is done! 😁 Thanks @CatmaCator and Robyn for the invitation. Loo….
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RT @nzradu: 🚨🚨🚨We have a new manuscript on the functional role of gene body methylation. Spoiler alert: we showed that it buffers transcrip….
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RT @GomollonSara: @RobynAEmm not only coordinate a session at @SEBiology conference but also presented twice: her postdoc work at @CatmaCat….
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RT @JXBot: **SPECIAL ISSUE NOW OPEN**. 𝐏𝐥𝐚𝐧𝐭 𝐄𝐩𝐢𝐠𝐞𝐧𝐞𝐭𝐢𝐜𝐬. Guest edited by @CatmaCator, Tamara Lechon Gomez & @avprobst . Deadline for submi….
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I am glad of being invited to @HZAU_China this autumn for the next #Horticulture_Advances Editorial Board Meeting. Horticulture Advances is a brand-new #journal lauched by Huazhong Agricultural University, edited by @SpringerNature. ⬇️For submission ⬇️.
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Amazing post written from @Katie_JC about her PhD work and the amazing interaction we had with BlueBEAR High-Performance Computing @uob_bear at @unibirmingham .
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RT @DJ_Gibbs: Job opportunity (pls RT)! @UoBbiosciences @PlantSci_UoB is advertising for an Assistant or Associate Professor in Plant Biolo….
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With Marcella with her poster at our first #monogram conference!! Our first steps into #wheat #epigenetics
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Amazing post produced by Tanshpreet about her intership project on #wheat #epigenetics in our lab! Thank you Tanshpreet!. Blog: My experience with the Sustainability Summer internship via @unibirmingham.
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Well done Katie!.
Super happy to say that my first ever R package has been successfully accepted to @Bioconductor ! mobileRNA supports mRNAseq/sRNAseq analysis and expression of multiple genomes - great for plant graft or host-pathogen systems. Check it out:
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I and @RobynAEmm are organising the session "#Genomic and #epigenetic plasticity in #plants", at next #SEBConference in Prague! Abstract submission up to 8th March! Amazing speakers includes Frank Johannes, @FilipeDSBorges, @GomollonSara.
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RT @ELunaDiez: 🔈 NEW PhD position in my group! Fully funded @MIBTP1 iCASE studentship with @enzazaden and @CatmaCator as co-supervisor! Wor….
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