Nathan Sheffield
@shefflab
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Joined May 2017
Need to combine BED files into a consensus set? Our paper with methods to do this just came out in NAR! --Methods for constructing and evaluating consensus genomic interval sets
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RT @biorxiv_genomic: BEDMS: A metadata standardizer for genomic regionattributes #biorxiv_genomic.
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From biomedical cloud platforms to microservices: next steps in FAIR data and analysis: -- Read our new perspective on biomedical cloud computing at Scientific Data.
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Our paper on standardizing sample metadata is out in GigaScience:
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New bioinformatics paper: Embeddings of genomic region sets capture rich biological associations in lower dimensions
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Identity and compatibility of reference genome resources paper is out in NARGAB:
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RT @biorxiv_genomic: Identity and compatibility of reference genome resources #biorxiv_genomic.
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Anyone else interested in switching from HPC environment modules to linux containers to manage shared group software? Here's how I did it:
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RT @DBlankenberg: Great example of multiple awesome #communities working well #together. Honored to have been able to contribute. #usegalax….
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RT @biorxiv_genomic: PEPATAC: An optimized ATAC-seq pipeline with serial alignments #biorxiv_genomic.
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RT @strnr: Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects Code: https://t.….
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RT @biorxiv_bioinfo: Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects #bior….
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RT @OmicDataScience: Want to annotate sources of epigenetic variation in your DNA methylation, ATAC-seq, or multi-omics data? Check out the….
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