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Sefa Ayten Profile
Sefa Ayten

@sefayten

Followers
111
Following
1K
Media
3
Statuses
42

İstanbul, Türkiye
Joined November 2014
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@JoachimSchork
Joachim Schork
11 months
Visualizing gene structures in R? gggenes, an extension of ggplot2, simplifies the process of creating clear and informative gene diagrams, making genomic data easier to interpret and share. ✔️ Plot gene arrows to represent gene locations and orientations. ✔️ Visualize genomic
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@ThePlantJournal
The Plant Journal
2 years
Cat thyme (T. marum) produces the iridoid dolichodial to repel insects and attract cats😼 Smit et al. generated a genome assembly & investigated the genetic and enzymatic basis of iridoid biosynthesis @robin_buell @LichmanLab https://t.co/gkUAvEerll @wileyplantsci @SEBiology
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@CobusSmit21
Cobus Smit
2 years
Our paper on volatile biosynthesis in cat thyme has been published in @ThePlantJournal. The @LichmanLab had an amazing collab with @TheBuellLab. @sefayten assembled a chromosome-scale genome that allowed us to discover how cat thyme makes diverse iridoids.
Tweet card summary image
onlinelibrary.wiley.com
Cat thyme (Teucrium marum) produces the iridoid dolichodial which can repel certain insects and attract cats; the compound is also produced by some insect species. We generated a de novo chromosome...
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@sefayten
Sefa Ayten
2 years
Maça çıkmayın. #FBvsGS
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@CellAtlas
PlantCellAtlas.bsky.social
2 years
Register now for the 2nd workshop on single-cell sequencing techniques in plant biology! This 5-hour virtual workshop begins at 11:00 AM EST on November 30th, and features panel discussions, seminars, and more! Register: https://t.co/OfPIKbpK6F More Info: https://t.co/vZA1FXONCU
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@TheBuellLab
Buell lab
2 years
Here at TerpNet2023 with @CobusSmit21 from @LichmanLab hearing about @TheBuellLab's collaboration on the synthesis of kitty crack by cat thyme! Made possible by excellent genome assembly by @sefayten. Super cool plant!
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@OConnor_lab
O'Connor Lab
3 years
We are looking for PhD students and post-docs. Visit https://t.co/NYLiWynTeo for more information and contact information.
sarahoconnor.org
The O'Connor group studies plant natural product biosynthesis, including alkaloids and iridoids.
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@LichmanLab
Lichman Lab
3 years
We sequenced the genome of 🇯🇵 Japanese 🐱catnip🌿and found an unusual bipartite✌️ biosynthetic gene cluster🧬 for monoterpenoid production 🍃that arose via a chromosomal inversion+duplication🔄. This helped us find a previously missing reductase 🎉.
@MPlantPCom
Molecular Plant & Plant Communications
3 years
A chromosome-level genome assembly reveals that a bipartite gene cluster formed via an inverted duplication controls monoterpenoid biosynthesis in Japanese catnip #research #MolecularPlant https://t.co/9tE42eo7uR
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@rdpalacio
Ruben Dario Palacio, Ph.D.
3 years
Here's how to conduct a literature review using Google Scholar, @zotero, @RsrchRabbit , and @obsdmd . A step-by-step guide👇
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@LichmanLab
Lichman Lab
3 years
PhD studentship opportunities available for Autumn 2023 entry. Which to choose?
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@ChenxinLi2
Chenxin Li, PhD (@chenxinli2.bsky.social)
3 years
I made a new tutorial: "Simple Tidy GeneCoEx", a simple gene co-expression analyses workflow powered by tidyverse and graph analyses. Link: https://t.co/ADs2wrDfTW Also graphics generated from an example dataset:
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@ChenxinLi2
Chenxin Li, PhD (@chenxinli2.bsky.social)
3 years
My "customized upset plots" repository has been updated! README has been updated as well. If you are looking for alternatives for Venn diagram, try it out. 🧵1/n https://t.co/75IZ4vsNGQ
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@ChenxinLi2
Chenxin Li, PhD (@chenxinli2.bsky.social)
3 years
Here is "friends don't let friends forget to check data range at each factor level". The experiment measured 3 compounds across 2 groups (control vs. treatment). Without checking data range for each compound, you will miss that the treatment had a strong effect on compound 1.
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@TsaiLabUGA
CJ Tsai
3 years
Please RT - multiple positions!!
@jobRxiv
jobRxiv
3 years
Postdoc Positions in Poplar Functional Genomics with @TsaiLabUGA University of Georgia, Athens, GA, USA https://t.co/39PkWarR0M #ScienceJobs @UGAResearch @PlantCenterUGA
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@TheBuellLab
Buell lab
3 years
Congrats to @sefayten for receiving the best poster award at Master level at #PBGG annual retreat last week. Very exited to present our study about "Chromosome-scale genome assembly of medicinal plant Teucrium marum (Lamiaceae)".
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@sefayten
Sefa Ayten
4 years
Do you think this is gonna happen?
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@LichmanLab
Lichman Lab
4 years
Delighted to share our new review on plant biosynthetic gene clusters (BGCs) now published in Natural Product Reports @CobusSmit21 https://t.co/7hJnezZX5v 🌱🧬⚗️🌿
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@sefayten
Sefa Ayten
4 years
Looking forward to seeing you @agbt. I will present the our study titled “Chromosome-scale Genome Assembly of the Medicinal Plant Teucrium marum (Lamiaceae)” as @TheBuellLab. Please stop by poster #801. See you very soon!
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@sefayten
Sefa Ayten
4 years
I have seen this tree first time in my life. Do you know the name of it?
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