Rónán Daly
@ronancdaly
Followers
40
Following
77
Media
2
Statuses
30
Head of Data Analysis at Glasgow Polyomics
Joined July 2020
East Dunbartonshire Council was planning to impose a new headteacher on a primary school, so I asked some questions. A few hours later, the council's plans had been abandoned. So, what happened? https://t.co/l9QpPn2tWY
heraldscotland.com
After more than two decades in charge, the headteacher of Killermont Primary School in Bearsden is heading off for a well-earned retirement, and a…
3
12
30
Closing tomorrow, please apply if you have an interest in analysing complex biological data using statistical and machine learning techniques ->
We're hiring a new Statistical/Machine Learning data analyst for the new Shared Research Facilities at the University of Glasgow! Help analyse omics experiments and build tools to understand complex high-dimensional data. Apply here -> https://t.co/Td0jic5lan
0
3
2
We're hiring a new Statistical/Machine Learning data analyst for the new Shared Research Facilities at the University of Glasgow! Help analyse omics experiments and build tools to understand complex high-dimensional data. Apply here -> https://t.co/Td0jic5lan
0
3
4
Excellent work by @mcbrider5002, even Reviewer 2 admitted it was a "a landmark contribution for designing innovative mass spectrometry acquisition strategy"
New publication with @OxfordJournals "TopNEXt: Automatic DDA Exclusion Framework for Multi-Sample Mass Spectrometry Experiments" with @Vinny_Davies89, @joe__wandy, @ronancdaly, @sdrogers, Stefan Weidt and @BioAIgroup!
0
0
1
Happy to have contributed a talk to @glasgowcompbio 2023 on 'Omics Design For Basket Trial in Precision Medicine'. Joint work with @ronancdaly from @polyomics, Kevin Bryson and Marina Flores. Slides available from https://t.co/WobMWXmQEC.
0
1
6
Happy to share our new paper led by Ross McBride and @joe__wandy entitled 'TopNEXt: Automatic DDA Exclusion Framework for Multi-Sample Mass Spectrometry Experiments'
biorxiv.org
Motivation Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) experiments aim to produce high quality fragmentation spectra which can be used to identify metabolites. However, current Data-D...
1
5
5
Our new #rstats package MsBackendSql was accepted in @Bioconductor 🥳 It provides a #Spectra backend to store #MassSpectrometry data in a #SQL database - ideal for large data sets and/or remote access! https://t.co/BbpjWMjxld
0
8
23
2023 is starting strong - already two large-scale mGWAS out, plus not to forget @pillai_praveen et al. @NatureMedicine 2022 paper. Visit the table of all #GWAS with #Metabolomics to read more about the latest #mQTL discoveries (updated 13 January 2023)
metabolomix.com
Here you find references to all published mGWAS in humans, ordered by publication date. If a study is missing from this list, please let me know. Please note that I do not apply a strict inclusion …
1
8
34
I made a page that gives you increasingly absurd trolley problems :) https://t.co/MwfoNTv4Tm
406
3K
13K
There's been a big push to make the code easier to use - if you're interested in mass spec fragmentation strategies or just MS simulation in general then have a look
Happy to share our newly published ViMMS 2.0, a framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics: https://t.co/a62hjAZvhb. You can use it to simulate existing data under different fragmentation strategies, or as a test-bed to develop new ones
0
1
2
Presenting GraphOmics, a user-friendly platform to explore and integrate multiple #omics #datasets and support hypothesis generation from @ronancdaly and @joe__wandy, in #BMCBioInformatics: https://t.co/J4zlkjE1V3
@UofGlasgow
0
1
2
Looking for a great PhD - come and join us. If you have any doubts if our CDT is right for you, get in touch and we can link you to staff and current students to find out more. Equality, diversity and inclusion are key - this is a great opportunity for all bright minds!
There is just under 2 weeks left to apply for a 2022 PhD with us at @UofGlasgow @unibirmingham or @AstonUniversity Deadline: 31 January 2022 Apply here: https://t.co/EtC3Chk52E
#FindAPhD #phdchat #PhDUK
0
18
47
Here's a piece @joe__wandy and myself have been working on for a while. "GraphOmics: an interactive platform to explore and integrate multi-omics data". It's a web app to browse and visualise #multiomics data, based on the @reactome knowledge base https://t.co/fiFJDEjxCR.
1
6
19
I was drawing this in primary school over 30 years ago - funny how this is still a thing.
0
0
3
Doing pathway analysis in #metabolomics? You might be interested in our new study of perils and pitfalls https://t.co/CS1awjc4qI Great effort from first author Cecilia! @MetabolomicsSoc @metabolomics @LdnMetaboNet
biorxiv.org
Over-representation analysis (ORA) is one of the commonest pathway analysis approaches used for the functional interpretation of metabolomics datasets. Despite the widespread use of ORA in metabolo...
1
35
89
Some work I was involved in is on the homepage of Nature Microsystems & Nanoengineering -
0
0
5
Happy to share #collaborative work on MS/MS #massspectrometry #acquisition optimization through an in-silico framework with @Vinny_Davies89, @joe__wandy, @ronancdaly, @polyomics, @sdrogers. Data-dependent analysis DDA strategies can be much approved on! https://t.co/rx1rirWdlI
pubs.acs.org
Tandem mass spectrometry (LC-MS/MS) is widely used to identify unknown ions in untargeted metabolomics. Data-dependent acquisition (DDA) chooses which ions to fragment based upon intensities observed...
2
5
29
Proud of @kmcluskey and @joe__wandy in getting this paper out - SVD methods such as #mPLAGE in #PALS really do handle noisy and missing values better than the alternatives, which is crucial in #metabolomics #pathway analysis.
Great paper just out with @kmcluskey @joe__wandy @ronancdaly @soreearskid et al. on #pathway #activity levels. #PALS is a #Python based tool discovering active pathways or #metabolite #sets in #metabolomics data using the mPlage algorithm. @MetabolitesMDPI
https://t.co/DaxVl1Br5U
0
6
9