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Nae-Chyun Chen Profile
Nae-Chyun Chen

@naechyun_chen

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Genomics x Software | @exaibio | @JHUCompSci and NTU (Taiwan) alum | Sports fan

SF Bay Area
Joined March 2010
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@naechyun_chen
Nae-Chyun Chen
3 years
T2T references give drastic assembly improvements, but older ones are useful with rich annotations. LevioSAM2 is an alignment method aiming for the best of both worlds, exploiting the best assembly while reporting w/r/t an older assembly (like GRC) 1/
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@naechyun_chen
Nae-Chyun Chen
1 month
RT @biorxiv_bioinfo: Pangenome-aware DeepVariant #biorxiv_bioinfo.
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@naechyun_chen
Nae-Chyun Chen
1 month
RT @DrSamuelBHume: This is amazing: the first large, randomized trial to show that exercise improves survival after cancer . The benefit f….
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@naechyun_chen
Nae-Chyun Chen
2 months
RT @ARoknabadi: 1/8 I’m pleased to share our paper on @exaibio’s RNA + generative AI liquid biopsy platform for early colorectal cancer det….
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@naechyun_chen
Nae-Chyun Chen
2 months
RT @CellGenomics: Ethics choices during the Human Genome Project reflected their policy world, not ours
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@naechyun_chen
Nae-Chyun Chen
2 months
RT @anthonycosta: Check out new work from @NVIDIAHealth Genomics, @genentech, transcriptome-guided genomic alignment with transformer-base….
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@naechyun_chen
Nae-Chyun Chen
2 months
RT @Nature: Nature research paper: Human de novo mutation rates from a four-generation pedigree reference.
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@naechyun_chen
Nae-Chyun Chen
3 months
RT @tangming2005: Terminal Genome Viewer Another one that is around for a while: ASCIIGenome .
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@naechyun_chen
Nae-Chyun Chen
3 months
RT @MKarimzade: 1/ It has been a privilege to have the opportunity fo contributing to Exai-1. Shout out to my co-first author, @AidenSababi….
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@naechyun_chen
Nae-Chyun Chen
3 months
RT @genophoria: Joining forces with Babak Alipanahi, @DavisCompGen, @AidenSababi & @MKarimzade to bring you Exai-1; a multi-modal cell-free….
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@naechyun_chen
Nae-Chyun Chen
4 months
RT @pronounced_kyle: @migowski Saying "I did this because McKinsey recommended it" is a get-out-of-jail free card for an exec in a way that….
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@naechyun_chen
Nae-Chyun Chen
4 months
RT @acarroll_ATG: Nice to see the impact of this important work. This benchmark set (v4.2.1) drove a huge amount of improvement sequencing.….
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@naechyun_chen
Nae-Chyun Chen
4 months
RT @Koen_VdE: Here's a cool, simple technique I learned from Joey @Cherdarchuk: in a choropleth map, your legend can double as a histogram….
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@naechyun_chen
Nae-Chyun Chen
5 months
RT @mbeisen: This discussion of the Monty Hall problem inspired me to post about an under appreciated way in which the same counterintuitiv….
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@naechyun_chen
Nae-Chyun Chen
5 months
Growing up watching Dirk, what a sad day it is. The 2011 playoff run is my best memory in sports.
@luka7doncic
Luka Doncic
5 months
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@naechyun_chen
Nae-Chyun Chen
5 months
RT @genophoria: This year, miRNAs won the Nobel Prize—small non-coding RNAs (smRNAs) have arrived! But the biology of many smRNAs remains a….
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@naechyun_chen
Nae-Chyun Chen
6 months
I started listening to Acquired in 2024 and have had so much fun!! Also love the TSMC old episode -- didn’t know that Morris Chang didn’t own any shares when “founding” the company. Crazy.
@AcquiredFM
Acquired Podcast
6 months
2024 was obviously a crazy year for us. We looked at our analytics and as you'd imagine, all of our most-listened to episodes ever were released this year. Microsoft, Hermès, Starbucks, Meta, etc. Compounding!. but what *older* episodes were most-listened to in 2024?
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@naechyun_chen
Nae-Chyun Chen
7 months
RT @RECOMBconf: We’re thrilled to announce the keynote speakers for #RECOMB2025! Don’t miss the opportunity to gain insights from leading e….
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@naechyun_chen
Nae-Chyun Chen
8 months
RT @exaibio: 💥New Publication Alert in Nature Communications 💥.Our latest publication features our novel generative AI platform, showcasing….
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@naechyun_chen
Nae-Chyun Chen
9 months
RT @PabloVidalRibas: I am editor in a journal. The last time a reviewer accepted my invitation to review was June 29. Currently, I have a m….
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@naechyun_chen
Nae-Chyun Chen
9 months
RT @jim_elevator: Happy to announce that our (me and @YunWilliamYu) metagenome profiler sylph ( is now published in….
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