Marius Pachitariu
@marius10p
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running a lab @HHMIJanelia, data (neuro) scientist, visual cortex, large-scale recordings #Kilosort, #Suite2p, #Cellpose
Janelia Research Campus
Joined December 2011
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Story: 1. Neurons in the brain are very chatty: they fire action potentials, their basic unit of communication, even when there is nothing to communicate. For example in this video, in visual cortex recordings in complete darkness. Lots of chatting:
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RT @HHMIJanelia: 🖥️ A new version of #Cellpose – the popular tool developed by @computingnature & @marius10p that maps the boundaries of di….
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RT @naturemethods: Cellpose3 from @marius10p and @computingnature uses deep learning to enhance degraded images for more accurate segmentat….
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RT @maddenifico: Rachel Maddow, imploring the agencies that protect the United States of America to wake the fuck up about the dangerous na….
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RT @MarkRuffalo: We're back. Let's #AssembleForDemocracy. In the #ElectionEndgame, every vote counts 🗳️ #VoteBlue! Vote @KamalaHarris @Tim_….
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RT @HHMIJanelia: 🖥️ Rastermap, a new visualization tool developed by the Stringer (@computingnature) & Pachitariu (@marius10p) labs, helps….
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Read about our experience and that of others in building software for biology. #kilosort #suite2p #cellpose #facemap #rastermap.
Six tips for going public with your lab’s software: 1) make time for maintenance.2) simplify installation.3) add a GUI or good CLI.4) good documentation.5) use github/git.6) automated testing.Any other tips people have?.#OpenScience #OpenSource.
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RT @computingnature: Six tips for going public with your lab’s software: 1) make time for maintenance.2) simplify i….
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RT @NatureNeuro: Rastermap: a visualization method that displays large-scale neural data (even hundreds of thousands of neurons) as a raste….
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RT @computingnature: Make your next discovery using #Rastermap, a visualization method for large-scale neural data. Paper now out, w/ @mari….
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RT @computingnature: 📢 #Rastermap paper out now, easily explore and visualize your neural recordings 🐭🐒🐟 and ANNs 🤖 .
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#Kilosort and #Suite2p applied to human loop organoids. Great new work from @Sergiu_P_Pasca and team.
Today we introduce human neural loop #assembloids created from 4 parts derived from stem cells to study the cortico-striato-midbrain-thalamo-cortical pathway and to model neurodevelopmental disease . Work led by the remarkable Ji-Il Kim.and Yuki Miura in the lab. Also in
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RT @Sergiu_P_Pasca: Today we introduce human neural loop #assembloids created from 4 parts derived from stem cells to study the cortico-str….
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RT @MishaTeplitskiy: Reasons authors give for not sharing data when their paper says "data available upon request"..
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RT @TheRealDrDukes: Now that I have some time, let me tell y’all about the DISRESPECT that Black In Neuro experienced by SfN staff last nig….
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RT @DrAnneCarpenter: Neat position at HHMI in Chevy Chase MD:."Open Science Strategy Program Coordinator".pay range $75-120k, PhD required….
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Work with us an AI scientist or engineer, apply now!.
✨ We’re excited to announce that we’re recruiting scientists for AI@HHMI, our new $500 million initiative to embed AI systems throughout every stage of the scientific process. 🖥️. 🔗 Check out the first of our open positions & apply today ➡️
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RT @HHMIJanelia: ✨ We’re excited to announce that we’re recruiting scientists for AI@HHMI, our new $500 million initiative to embed AI syst….
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RT @HHMIJanelia: Atika Syeda (@Atika_Ibrahim) is a graduate scholar in the Stringer (@computingnature) & Pachitariu (@marius10p) labs @hhmi….
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RT @anshulkundaje: Nice benchmark of single cell "foundation models" (scGPT, scFoundation) and GEARS (a GNN model)….
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RT @julie_charlton_: I’m excited to share the results of a massive collaborative effort from the @brody_lab, now in preprint form at: https….
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