Encarnita Mariotti-Ferrandiz
@mariottienca
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Full Professor in Immunology @ Sorbonne Universite; systems immunology; immune repertoire; autoimmune diseases; Biomarkers discovery
Paris, France
Joined November 2010
Happy to share our nice collaborative work https://t.co/OpttaWMJNC published in @NatureBiotech @Sorbonne_Univ_ @ScienceSorbonne @APHP @Inserm
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Lead researcher position on autoimmune diseases job with French National Institute for Health Research (INSERM) | 12838397 at i3Lab in Paris, France! Don’t hesitate to reach out!!!
nature.com
Research position leading to a permanent position at Inserm (equivalent to Associate professor).
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The absolute best post of the day, and probably of the month, was from the other place, but I'll tell you all about it here. This public atlas came online to relate disease to protein levels found in the blood from thousands of people across many diseases, searchable by sex. 1/
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Bridging on our #AIRRCVII meeting, we are happy to announce an #AIRRspecialissue @immuno_inform: AIRR lovers, submit your results, tools, methods, reviews, thoughts, on machine learning & germinal variation. Thx to my co-guest editors Corey Watson, William Lees & Justin Barton!
Special issue: Perspective of Machine Learning and Germline Variation Research In Adaptive Immune Receptor Repertoires: https://t.co/14JOP6cBHf Guest editors: Encarnita Mariotti Ferrandiz, Corey Watson, Justin Barton, William Lees Submission deadline: 15 February 2025
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Special issue: Perspective of Machine Learning and Germline Variation Research In Adaptive Immune Receptor Repertoires: https://t.co/14JOP6cBHf Guest editors: Encarnita Mariotti Ferrandiz, Corey Watson, Justin Barton, William Lees Submission deadline: 15 February 2025
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Thank you to the organizers from #CNICbio for this fantastic meeting in understanding immunity in cardiovascular disease! Looking forward for the next one!
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Free online course: MLCB24 - Machine Learning in Computational Biology Fall 2024 from @manoliskellis @MIT
https://t.co/waAw4EU1im L1: Course Overview, Machine Learning, Deep Learning, Generative AI, and the Unification of Biology Module1:
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We are delighted to share our work featuring AnalyzAIRR: A user-friendly guided workflow for AIRR data analysis. #MiAIRR compliant #AIRRforall @vanessajmh
biorxiv.org
The analysis of bulk adaptive immune receptor repertoires (AIRR) enables the understanding of immune responses in both normal and pathological conditions. However, the complexity of AIRR calls for...
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TCR lovers, we are delighted to share our benchmarking of TCR specificity tools using an harmonized aggregation of public databases.
biorxiv.org
Identifying T cell receptor (TCR) specificity is crucial for advancing the understanding of adaptive immunity. Despite the development of computational methods to infer TCR specificity, their...
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📢 Persoal investigador e estudantado comparten coñecementos e proxectos na 7ª edición do CINBIO Annual Meeting. Moitas grazas a todas persoas que fan que este encontro sexa posible! 💙 Máis info ➡️ https://t.co/n0gPd5Q7N5
#7AMCINBIO #SomosCIGUS #HRS4R #teamCINBIO
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After the coffee break, it’s de turn of Encarnita Mariotti-Ferrandiz (@mariottienca), from @Sorbonne_Univ_, and her lecture: “Blood T cell receptor repertoire studies: towards biomarker discovery in autoimmune and inflammatory diseases”. Thank you for your talk! #7AMCINBIO
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It was a fantastic edition! Many thanks to all the participants and assistants. And a special mention to our organizing team for such an interesting congress! We hope to see you all again next year for the VIII CINBIO Annual Meeting! 💙 #7AMCINBIO #teamCINBIO #SomosCIGUS #HRS4R
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I'll be attending the amazing AIRR Community Meeting VII - Learnings and Perspectives. Let me know if you're planning to attend so that we can say Hi! 👋 Or register now and join me at the event! https://t.co/4KOx9LohF6
#airrc7 - via #Whova event app
whova.com
2024-06-03, Porto
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AIRR-C meeting news: Both early bird registration and travel award application deadlines have been extended to April 20!
antibodysociety.org
15 years after the first AIRR-seq sequencing, what have we learned in the basic and biomedical research fields? What is next? Thank you for joining us at the AIRR-C Meeting in Porto this June, the...
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Delighted to share our last work providing approaches for accurate TCR repertoire exploration in small and hard to handle samples. Thanks to @vanessajmh, @PBarennes, and all the #i3lab @Sorbonne_Univ_ for this dedicated fundamental research work!
Enhancing comparative T cell receptor repertoire analysis in small biological samples through pooling homologous cell samples from multiple mice
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Enhancing comparative T cell receptor repertoire analysis in small biological samples through pooling homologous cell samples from multiple mice
cell.com
Mhanna et al. present an approach for T cell receptor (TCR) repertoire characterization in small samples. They show that pooling similar biological samples enhances TCR repertoire coverage in subsets...
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AlphaFold2 and RoseTTAFold are limited to predicting the 3D structure of proteins. A new all-atom method models complete biomolecular assemblies, including proteins, nucleic acids, small molecules, metals, and covalent modifications. #NBThighlight
science.org
Deep-learning methods have revolutionized protein structure prediction and design but are presently limited to protein-only systems. We describe RoseTTAFold All-Atom (RFAA), which combines a residu...
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check out our new work led by @GMarcoVisani on equivariant holographic variational auto-encoder (H-VAE) in @PhysRevResearch it extracts geometry-aware compressed representations of 3D point clouds, e.g. proteins, used for protein binding prediction &... https://t.co/tNIhTGUgj6
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check out our new work on composition of T cell repertoires during thymic selection. led by @giulioisacchini, with Thierry Mora, Aleks Walczak, @mariottienca and Klatzmann Lab
Before detecting pathogens, immune cell receptors undergo thymic selection. A new study shows that this process preserves wide variability in the repertoires across individuals and cell types while finely focusing on select, optimal receptors. 📝 https://t.co/V9pDrmHSWh
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📣We are hiring! An INSERM chaire at i3 lab opening for a fast track team leader position for experienced researcher in systems immunology - check out and contact us! Application by April 2nd 2024 here :
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The matters arising article in @NatureBiotech showed that the alleged superiority of UMAP can be entirely attributed to different choices of initialization: Initialization is critical for preserving global data structure in both t-SNE and UMAP https://t.co/XnBm3RVfCK
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