Lukas Heumos
@LukasHeumos
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Research software engineer @laminlabs | Steering council @scverse_team | Postdoc at @fabian_theis lab
Munich
Joined October 2011
I hate reference limits of journals so much. I'm sitting here trying to find a few more references to remove despite me knowing that I'll either remove context & evidence for scientific conclusions or not mention tools that very much deserve to be mentioned and cited.
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RT @jure: Thrilled to share @scverse_team x @ProjectBiomni! .Biomni agent now supports 10 scverse core packages including scanpy, squidpy,….
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RT @scverse_team: Zoom registration link: . To get a preview, check out the latest docs and bring questions! https:….
anndata.readthedocs.io
Tests Conda Coverage Docs PyPI Downloads Downloads Stars Powered by NumFOCUS image anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas ...
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RT @scverse_team: We will have our next community meeting on Tuesday, 2025-06-24 at 18:00 CEST! Sneha Mitra (@sneha__mitra) will speak abou….
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RT @anshulkundaje: @BoWang87 U have repeatedly claimed that scGPT can predict effects of perturbations. Yet there have been plenty of bench….
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RT @scverse_team: Tuesday, 2025-05-27 at 18:00 CEST, we will have our next community meeting! .Yuan Gao will speak about Forseti and introd….
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RT @nalidoust: I am excited to announce the winners of our @tahoe_ai Tahoe Deep Dive hackathon with @huggingface. We created and released….
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RT @scverse_team: scverse turns 3!.What started as a shared vision for interoperable single-cell analysis has become a vibrant, global comm….
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RT @gtcaa: The next edition of the scverse conference is going to be later this year — mark your calendars and keep an eye on the announcem….
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RT @scverse_team: This Tuesday, 2025-05-13 at 18:00 CEST, we will have our next community meeting!. Gregor Sturm will present on scirpy! Ch….
scverse.zulipchat.com
Browse the publicly accessible channels in scverse without logging in.
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One of the few companies that you're rooting for to put out a nice product to ensure that you can continue developing all the great tools that you've shipped.
🚨🚨🚨 Rare opportunity alert 🚨🚨🚨. We're hiring engineers to build our first hosted product. Small team (me included). Significant impact on technical direction. Building for world-class companies and the broader Python ecosystem. Link in thread (or DM me).
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RT @nytimes: The popular DNA test kit company 23andMe has filed for bankruptcy and is looking for a buyer. And while the company has promis….
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RT @scverse_team: Today, 2025-03-04 18:00 CET, Benjamin Rombaut will speak about Harpy, a spatial proteomics tool, as well as other tools f….
scverse.zulipchat.com
Browse the publicly accessible channels in scverse without logging in.
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RT @scverse_team: 🎉 Scanpy 1.11.0 is out! 🎉 just after reaching 2000 stars on GitHub!. - sc.pp.sample replaces subsample with many new fe….
scanpy.readthedocs.io
Version 1.11: 1.11.4 2025-07-30: Bug fixes: Recalculate colors when color keys length does not match number of categories e.g., in scanpy.pl.umap() Ilan G(#3725), Use dask version from anndata for ...
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RT @mariabrbic: Thrilled to share LUNA🌕 – our new generative AI model that reassembles tissues from dissociated cells! Think of it as Alpha….
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RT @KHrovatin: To figure out what it takes to make flow matching models solve single-cell biology questions, I discussed with Alessandro Pa….
hrovatin.github.io
Models that fit like water in a vessel.
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RT @scverse_team: Don't forget to apply to the upcoming @scverse_team x @OwkinScience hackathon - applications due this Friday, February 7t….
docs.google.com
We're pleased to announce the next Scverse Hackathon will take place in the Owkin offices in Paris from 17/03/2025 9am to 19/03/2025 1:30pm. This hackathon is a joint initiative between the scverse...
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RT @scverse_team: On Tuesday at 2025-02-04 18:00 CET, @jkobject will talk about scPrint, a transformer model that infers gene networks fro….
github.com
single cell foundation model for Gene network inference and more - cantinilab/scPRINT
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Finally!.
We’re building a new static type checker for Python, from scratch, in Rust. From a technical perspective, it’s probably our most ambitious project yet. We’re about 800 PRs deep!
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RT @MDLuecken: Looking for a PhD position? Interested in precision medicine in COPD and Asthma using single-cell genomics and machine learn….
respire-excel.eu
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