Arjun Krishnan
@compbiologist
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ML & data-driven discovery; Complex traits & diseases; Data reuse & open science. Associate Professor | Group leader @KrishnanLab | @compbiologist everywhere
CU Anschutz Med Campus
Joined May 2008
Preprint 🚨.A review state-of-the-art computational strategies for cross-species knowledge transfer in biomedicine.💻👩🦰🐭🐟🪰🪱🧬🫁⚕️. Led by an excellent team at @KrishnanLab: @yhbioinfo, @ChrisAMancuso, & @kaylainbio in collab w/ @FishEvoDevoGeno 🧵.
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As a fan of the super @nightsciencepod (highly recommend it!), I enjoyed listening to the latest episode of another favorite — Work Life — where @AdamMGrant talks to @nathanmyhrvold about invention & creativity!.
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#ASHG24 Interested in comparing & transferring data & knowledge across species for translational biomedicine? This review is for you!. We take a deep dive into methods & highlight gaps/challenges. Details on implementation, data, & benchmarks:
Preprint 🚨.A review state-of-the-art computational strategies for cross-species knowledge transfer in biomedicine.💻👩🦰🐭🐟🪰🪱🧬🫁⚕️. Led by an excellent team at @KrishnanLab: @yhbioinfo, @ChrisAMancuso, & @kaylainbio in collab w/ @FishEvoDevoGeno 🧵.
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#ASHG2024 #ASHG24 If you’re interested in effectively reusing public omics data and/or passionate about data discovery, data reuse, metadata, etc., do ping me!.
Annotating Publicly-Available Samples and Studies Using Interpretable Modeling of Unstructured Metadata. 1. This study introduces txt2onto 2.0, an improved NLP and ML-based tool that automates the annotation of unstructured biomedical metadata, linking samples and studies to
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RT @anthonygitter: Our preprint 'Chemical Language Model Linker: blending text and molecules with modular adapters' is now out on arXiv, le….
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RT @CUBiomedInfo: Have you ever wondered what it takes to complete a postdoc? @compbiologist, PhD, from the @krishnanlab kicked off our Byt….
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RT @kellydsullivan: Join us to learn more about the Human Medical Genetics and Genomics PhD Program on October 21!.
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RT @CUBiomedInfo: Today, @compbiologist, PhD, joined us for Bytes to Bedside. To celebrate #NPAW2024, he led a workshop offering valuable t….
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RT @RangarajuVidhya: 🙏Thank you, SfN (@SfNtweets). I am humbled and honored to receive this award, which has recognized many excellent scie….
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RT @CUInternalMed: 🌟Celebrating #WomeninMedicineMonth with @JRegensteiner, a trailblazer in women's health research! As Director of the Lud….
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RT @be_stranger: Pls share: . Our lab is hiring for multiple statistical genetics/genomics roles @CUMedicalSchool @CUBiomedInfo @CUAnschu….
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RT @CUBiomedInfo: 🎉 Happy National Postdoc Appreciation Week 🎉 To celebrate, this week's "Bytes to Bedside" seminar features @compbiologist….
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RT @anthonygitter: Our commentary "A renewed call for open artificial intelligence in biomedicine" is now available as a preprint. We call….
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.@denverpostdocs is celebrating the @NationalPostdoc Appreciation Week 🎊 #NPAW2024 with a myriad of events through the week!. At @CUBiomedInfo, on Sep 19 (12–1p MT), I'm offering:.Postdoc ergo proper doc, a workshop on planning & executing an effective postdoctoral experience.
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RT @OlgaTroyanskaya: Excited to share our latest preprint! With a great team led by @natsauerwald and @avithemicrobe: “Decomposition of phe….
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RT @CUBiomedInfo: To understand biological processes, spotting patterns in data is crucial. Traditional correlations can miss nonlinear pat….
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Another fantastic edition of MLCB comes to close!. It was fun to meet wonderful folks in the community & learn cool new techniques. Many thanks to the organizers for a great meeting @david_a_knowles @sara_mostafavi @anshulkundaje @suinleelab @QuonBio @james_y_zou!!. #MLCB2024.
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.@avapamini gave an expansive talk on generative protein design & introduced EvoDiff, a general-purpose diffusion framework for programmable, sequence-first protein design. 📜 💻 #MLCB2024
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Gokul Gowri from @wyssinstitute proposed latent mutual information (LMI), a new method that exploits underlying low-dimensional structure in high-dimensional data to approximate MI in high-dim settings w/ realistic sample sizes. #MLCB2024.
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This was bound to happen:. An approach developed in 2004 was just referred to as “old school”!. #MLCB2024.
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