Christopher Mancuso
@ChrisAMancuso
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Research Associate as the Center for Innovative Design and Analysis on the CU Anschutz Medical Campus
East Lansing, MI
Joined July 2017
RT @nf_core: Pipeline release! nf-core/atacseq v2.0 (ATAC-seq peak-calling, QC and differential analysis pipeline). See the changelog: http….
github.com
[2.0] - 2022-11-30 ⚠️ Major enhancements Samplesheet format has changed from group,replicate,fastq_1,fastq_2 to sample,fastq_1,fastq_2,replicate. This is primarily because we have removed the dif...
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RT @compbiologist: 🎇 We're one of 20 finalists for the DataWorks! Prize for our work on:. Removing metadata barriers to promote data reuse….
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RT @nf_core: Pipeline release! nf-core/cutandrun v3.0 (Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for….
github.com
[3.0] - 2022-10-27 Major Changes Major rework of the pipeline internal flow structure. Metadata from processes (such as read counts) was previously annotated to a channel dictionary that was pass...
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A network-based approach for isolating the chronic inflammation gene signatures underlying complex diseases towards finding new treatment opportunities
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RT @nf_core: Pipeline release! nf-core/scrnaseq v2.1.0 (A single-cell RNAseq pipeline for 10X genomics data). See the changelog: https://t.….
github.com
v2.1.0 - 2022-10-06 "Green Mercury Siberian Husky" Alevin workflow updated to use Alevin-Fry via simpleaf - thanks to @rob-p for supporting this and @fmalmeida implementing the support ...
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RT @nf_core: Pipeline release! nf-core/chipseq v2.0.0 (ChIP-seq peak-calling, QC and differential analysis pipeline.). See the changelog: h….
github.com
[2.0.0] - 2022-10-03 Enhancements & fixes Pipeline has been re-implemented in Nextflow DSL2 All software containers are now exclusively obtained from Biocontainers Updated pipeline template to...
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RT @nf_core: Pipeline release! nf-core/sarek v3.0.2 (Analysis pipeline to detect germline or somatic variants (pre-processing, variant call….
github.com
What's Changed Fix Vep plugin usage by @BarryDigby in #688 Fix when clause for building mapping indexes by @maxulysse in #689 Updating nf-core-modules by @asp8200 in #685, #734 Fix schema for...
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RT @nf_core: Pipeline release! nf-core/rnaseq v3.9 (RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform c….
github.com
[3.9] - 2022-09-30 Enhancements & fixes [#746] - Add tin.py output to MultiQC report [#841] - Turn --deseq2_vst on by default [#853] - Pipeline fails at email step: Failed to invoke workflow.o...
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RT @LogConference: LaTeX style files for LoG 2022 are now available 📝. Abstract deadline: 9th September, 2022 - 38 days to go!. CFP has all….
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RT @joelle_emerson: If you don’t want someone sending emails at 8pm, do you also not want them doing therapy at 4pm or feeding their kids a….
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RT @compbiologist: 🎉Happy to share that our group (@KrishnanLab) will be moving to @CUAnschutz @CUMedicalSchool in Aug!. We'll join the new….
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RT @daifengwang: Our review @UWWaismanCenter for NICHD IDDRC special issue on computational neuroscience. We envision machine learning fo….
jneurodevdisorders.biomedcentral.com
Intellectual and Developmental Disabilities (IDDs), such as Down syndrome, Fragile X syndrome, Rett syndrome, and autism spectrum disorder, usually manifest at birth or early childhood. IDDs are...
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RT @AviMaayan: Today @MaayanLab updated the augmented ASCT+B gene set library in #Enrichr The library was created f….
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RT @michaelhoffman: Bioinformatics too often relies on general-purpose CPUs when GPUs and other specialized hardware are more suited to the….
github.com
This is a feature request. I have been using BEDTools on Linux on an IBM z15 mainframe, and while most things work quite well, bedtools sort is not fast enough for the huge workloads I have. My z15...
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RT @MaartenvSmeden: NEW PREPRINT.The increasingly popular class imbalance approaches (such as SMOTE) for risk prediction modeling: they are….
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RT @RemyLau3: Automating PyPI releases with Github Actions
caktusgroup.com
I always seem to forget how to upload a release to PyPI, which is the Python Package Index, a repository of software for Python. It's actually simple to do, and I recently found a tool that helps...
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RT @lcolladotor: Geo @geo_pertea presented part 1/2 of "Robust #normalization and transformation techniques for constructing gene #coexpres….
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RT @RemyLau3: I just published in @TDataScience Cross-Entropy, Negative Log-Likelihood, and All That Jazz
towardsdatascience.com
Two closely related mathematical formulations widely used in data science, and notes on their implementations in PyTorch
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A great opportunity for a programmer in the group of @janani137! Anyone looking for a great person to work with, Janani is it!
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RT @RemyLau3: Graph Neural Networks beyond Weisfeiler-Lehman and vanilla Message Passing by @mmbronstein in @TDataScience .
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