Brandon Logeman
@brandon_logeman
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BRAIN Initiative K99/R00 Awardee || Studying hormonal control of neuronal circuits at the single cell level || 🐷 former pig farmer 🐷 #FirstGenCollege
Harvard University
Joined April 2010
@sanogenetics @doctorveera would love to hear any thoughts you have on this. Your podcasts and blogs have been a great source of information.
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Naive population genetics question: in multi-ancestry GWAS, are ancestry-specific associations common? For example, the recent BD analysis from @PGCgenetics found EAS specific associations. Rule or exception? @SashaGusevPosts @dgmacarthur @tuuliel
https://t.co/grKwq1WMdY
nature.com
Nature - Using multi-ancestry genome-wide association study and fine-mapping, 298 loci and 36 credible genes are identified in the aetiology of bipolar disorder.
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Excellent write up by @doctorveera found here: https://t.co/A4xc1gYfzw
gwasstories.com
Genetic investigation of a cardiac arrhythmia reveals a new noncoding Mendelian disease mechanism
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A new paper has identified an answer to this question, in which a structural variant causes the de novo creation of a cardiomyocyte-specific enhancer, leading to ectopic expression of a potassium channel and heart disease.
I’m looking for examples where a gene is normally expressed in cell type A but a GWAS/QTL hit contains a variant that causes ectopic expression in cell type B. All examples welcome, plz RT! @jkpritch @doctorveera @SashaGusevPosts @dgmacarthur @tuuliel @anshulkundaje
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A big congratulations to our #GWAS24 Poster Winners, Luis Eichelmann (@LuisEichelmann) from @UniLuebeck & Brandon Logeman (@brandon_logeman) from @Harvard 🎉👏
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New GWAS study examines when a baby takes their first steps 🧬 ➡️ 🚼 ➡️ 🚶♀️ SNP based heritability, a lower bound of heritability calculated using only common variants, shows up at ~25%, much higher than I would have guessed. Work led by @annagui86
This recent GWAS preprint is the first to explore genetic influences on the age at onset of walking 🚶♀️🚶, a milestone that may indicate broader (neuro)developmental delays. Find out more⤵️ https://t.co/MkzgEtKodl
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If you've made it this far thanks for reading and here again is the link to the original paper. https://t.co/Y7FlnVj58D
nature.com
Nature - Unimolecular integration of NMDA receptor antagonism with GLP-1 receptor agonism effectively reverses obesity, hyperglycaemia and dyslipidaemia in rodent models of metabolic disease.
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Finally, the clever use of a disulfide linker enables the two molecules to dissociate upon entry into the reducing environment of the cytoplasm. This strategy could further be used to deliver non-cell permeable reagents to cell types of interest.
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3) NMDA receptor antagonist. By using the cell-targeting strategy one can deliver these antagonists, which have already been shown to reduce food consumption, to circuits of interest to avoid the previously observed side effects.
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2) Cell-type specific targeting. By using the Glp1 neuropeptide as a building block, one can add an additional chemical moiety that will be delivered to Glp1 receptor expressing cells.
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1) Glp1 agonists have shown remarkable results in lowering body weight and have become immensely popular among individuals seeking to lose weight. This new bifunctional molecule builds upon these results.
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Which is why the authors fused an existing NMDA receptor antagonist with the now widely popular neuropeptide Glp1. This creates 3 key features for this application:
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But due to brain wide expression of NMDA receptors multiple neuronal circuits are affected, leading to a significant side effects...
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Previous work had shown that injecting NMDA receptor antagonists into the lateral hypothalamus inhibits food intake and causes a reduction in body weight. https://t.co/M2qugqugaV
pubmed.ncbi.nlm.nih.gov
To determine whether endogenous lateral hypothalamic (LH) glutamate and its N-methyl-D-aspartate (NMDA) receptors might participate in the stimulation of natural eating, LH injection of the NMDA...
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"...our approach demonstrates the feasibility of using peptide-mediated targeting to achieve cell-specific ionotropic receptor modulation..." https://t.co/Y7FlnVj58D
nature.com
Nature - Unimolecular integration of NMDA receptor antagonism with GLP-1 receptor agonism effectively reverses obesity, hyperglycaemia and dyslipidaemia in rodent models of metabolic disease.
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Targeting 💊 to specific cell types in the brain is challenging, but this new paper uses a bifunctional molecule that delivers an NMDA receptor antagonist to GLP-1 receptor expressing neurons in an effort to treat obesity 🧵
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I’m looking for examples where a gene is normally expressed in cell type A but a GWAS/QTL hit contains a variant that causes ectopic expression in cell type B. All examples welcome, plz RT! @jkpritch @doctorveera @SashaGusevPosts @dgmacarthur @tuuliel @anshulkundaje
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In a G0 cell, if Cohesin is continuously chugging along performing loop extrusion it must be going through a large amount of ATP. Does anyone have an idea how much of the cellular energy budget is dedicated to this process? @job_dekker @Jesse_R_Dixon @Anders_S_Hansen
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Several colleagues have asked for our protocol for preparing low-input samples for single nucleus multiome (gene expression + ATAC) sequencing. It is now available on @STARProtocols ( https://t.co/ozwW4SOWkP) so that everyone can give it a try. 1/7
star-protocols.cell.com
STAR Protocols is an open access, peer-reviewed journal from Cell Press. We offer structured, transparent, accessible, and repeatable step-by-step experimental and computational protocols from all...
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Suprachiasmatic nucleus promotes hyperglycemia induced by sleep delay: Current Biology
cell.com
Hurtado-Alvarado et al. demonstrate that sleep delay decreases suprachiasmatic nucleus (SCN) vasopressin neuronal activity, reducing GLUT1 in the arcuate nucleus, thus promoting hyperglycemia. Sleep...
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