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Brandon Logeman Profile
Brandon Logeman

@brandon_logeman

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BRAIN Initiative K99/R00 Awardee || Studying hormonal control of neuronal circuits at the single cell level || 🐷 former pig farmer 🐷 #FirstGenCollege

Harvard University
Joined April 2010
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@brandon_logeman
Brandon Logeman
10 months
@sanogenetics @doctorveera would love to hear any thoughts you have on this. Your podcasts and blogs have been a great source of information.
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@brandon_logeman
Brandon Logeman
10 months
Naive population genetics question: in multi-ancestry GWAS, are ancestry-specific associations common? For example, the recent BD analysis from @PGCgenetics found EAS specific associations. Rule or exception? @SashaGusevPosts @dgmacarthur @tuuliel https://t.co/grKwq1WMdY
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nature.com
Nature - Using multi-ancestry genome-wide association study and fine-mapping, 298 loci and 36 credible genes are identified in the aetiology of bipolar disorder.
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@brandon_logeman
Brandon Logeman
1 year
A new paper has identified an answer to this question, in which a structural variant causes the de novo creation of a cardiomyocyte-specific enhancer, leading to ectopic expression of a potassium channel and heart disease.
@brandon_logeman
Brandon Logeman
1 year
I’m looking for examples where a gene is normally expressed in cell type A but a GWAS/QTL hit contains a variant that causes ectopic expression in cell type B. All examples welcome, plz RT! @jkpritch @doctorveera @SashaGusevPosts @dgmacarthur @tuuliel @anshulkundaje
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@Fusion_Conf
Fusion Conferences
1 year
A big congratulations to our #GWAS24 Poster Winners, Luis Eichelmann (@LuisEichelmann) from @UniLuebeck & Brandon Logeman (@brandon_logeman) from @Harvard 🎉👏
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@brandon_logeman
Brandon Logeman
1 year
New GWAS study examines when a baby takes their first steps 🧬 ➡️ 🚼 ➡️ 🚶‍♀️ SNP based heritability, a lower bound of heritability calculated using only common variants, shows up at ~25%, much higher than I would have guessed. Work led by @annagui86
@PGCgenetics
PGC Consortium
1 year
This recent GWAS preprint is the first to explore genetic influences on the age at onset of walking 🚶‍♀️🚶, a milestone that may indicate broader (neuro)developmental delays. Find out more⤵️ https://t.co/MkzgEtKodl
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@brandon_logeman
Brandon Logeman
1 year
Finally, the clever use of a disulfide linker enables the two molecules to dissociate upon entry into the reducing environment of the cytoplasm. This strategy could further be used to deliver non-cell permeable reagents to cell types of interest.
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@brandon_logeman
Brandon Logeman
1 year
3) NMDA receptor antagonist. By using the cell-targeting strategy one can deliver these antagonists, which have already been shown to reduce food consumption, to circuits of interest to avoid the previously observed side effects.
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@brandon_logeman
Brandon Logeman
1 year
2) Cell-type specific targeting. By using the Glp1 neuropeptide as a building block, one can add an additional chemical moiety that will be delivered to Glp1 receptor expressing cells.
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@brandon_logeman
Brandon Logeman
1 year
1) Glp1 agonists have shown remarkable results in lowering body weight and have become immensely popular among individuals seeking to lose weight. This new bifunctional molecule builds upon these results.
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@brandon_logeman
Brandon Logeman
1 year
Which is why the authors fused an existing NMDA receptor antagonist with the now widely popular neuropeptide Glp1. This creates 3 key features for this application:
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@brandon_logeman
Brandon Logeman
1 year
But due to brain wide expression of NMDA receptors multiple neuronal circuits are affected, leading to a significant side effects...
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@brandon_logeman
Brandon Logeman
1 year
Previous work had shown that injecting NMDA receptor antagonists into the lateral hypothalamus inhibits food intake and causes a reduction in body weight. https://t.co/M2qugqugaV
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pubmed.ncbi.nlm.nih.gov
To determine whether endogenous lateral hypothalamic (LH) glutamate and its N-methyl-D-aspartate (NMDA) receptors might participate in the stimulation of natural eating, LH injection of the NMDA...
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@brandon_logeman
Brandon Logeman
1 year
"...our approach demonstrates the feasibility of using peptide-mediated targeting to achieve cell-specific ionotropic receptor modulation..." https://t.co/Y7FlnVj58D
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nature.com
Nature - Unimolecular integration of NMDA receptor antagonism with GLP-1 receptor agonism effectively reverses obesity, hyperglycaemia and dyslipidaemia in rodent models of metabolic disease.
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@brandon_logeman
Brandon Logeman
1 year
Targeting 💊 to specific cell types in the brain is challenging, but this new paper uses a bifunctional molecule that delivers an NMDA receptor antagonist to GLP-1 receptor expressing neurons in an effort to treat obesity 🧵
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@brandon_logeman
Brandon Logeman
1 year
I’m looking for examples where a gene is normally expressed in cell type A but a GWAS/QTL hit contains a variant that causes ectopic expression in cell type B. All examples welcome, plz RT! @jkpritch @doctorveera @SashaGusevPosts @dgmacarthur @tuuliel @anshulkundaje
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@brandon_logeman
Brandon Logeman
1 year
In a G0 cell, if Cohesin is continuously chugging along performing loop extrusion it must be going through a large amount of ATP. Does anyone have an idea how much of the cellular energy budget is dedicated to this process? @job_dekker @Jesse_R_Dixon @Anders_S_Hansen
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@ChenLiuLab
Chen Liu
2 years
Several colleagues have asked for our protocol for preparing low-input samples for single nucleus multiome (gene expression + ATAC) sequencing. It is now available on @STARProtocols ( https://t.co/ozwW4SOWkP) so that everyone can give it a try. 1/7
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star-protocols.cell.com
STAR Protocols is an open access, peer-reviewed journal from Cell Press. We offer structured, transparent, accessible, and repeatable step-by-step experimental and computational protocols from all...
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