afids
@afids_project
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anatomical fiducials project #openscience #neuroanatomy #neuroimaging #stereotaxy
Joined September 2019
Announcing the 10K USD INCF Open Neuroscience Award! The award: - encourages participants to test resources dev'd by large-scale brain initiatives - provides feedback to repositories re: usability & FAIRness - promotes data reuse & collaborative science https://t.co/jwroT5yBvN
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π¨ Please join us on July 12 for the next Data Sharing and Reuse Seminar where Satra Ghosh, Ph.D. will be presenting "The Transformative Potential and Challenges of Open Data and Technologies in Neuroscience." Register here! https://t.co/NYkf7I0Msv
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So proud of @alaa_t_ for representing the lab and @afids_project team at #OHBM2024 in South Koreaπ°π·! π§ π― Photo credit: @jasonkai & VioletLiu.
Excited to be giving a talk on @afids_project as part of #OHBM2024's #Neuroinformatics session (6/25 @ 12PMπ°π·; GB 103) Come π how we're: β‘οΈpooling 20K+ community curated π§ landmarks to π registration accuracy π― and for #QC β‘οΈcreating resources/apps to simplify this process
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The Neurosynth Team is at #ohbm2024 in Seoul! Come learn about our automated meta-analysis tools (including a preview of AI for Neurosynth π€) at the poster session. Posters #2235 and #2251 on Wed/Th
Attention neuroscientsts! π§ We just launched Neurosynth Compose: A free and open platform for neuroimaging meta-analysis. NS-Compose makes it easy to perform custom neuroimaging meta-analyses without leaving the browser. It's live, check it out!
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OHBM #Hackathon was a blast! Thanks to all our attendees and volunteers for a hugely successful programme of events. Looking forward to 2025 in Brisbane already! #ohbm2024
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Excited to be giving a talk on @afids_project as part of #OHBM2024's #Neuroinformatics session (6/25 @ 12PMπ°π·; GB 103) Come π how we're: β‘οΈpooling 20K+ community curated π§ landmarks to π registration accuracy π― and for #QC β‘οΈcreating resources/apps to simplify this process
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Hivemind: Does anybody have code to warp lots of coordinates across spaces using ANTs? (without writing/reading text files)? RT for reach β ππ
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πAnnouncementπ! The @neuroak & @jclauneuro labs are πππ§ππ£π π©π¬π€βοΈπ§ππ¨πππ§ππ π¨π€ππ©π¬ππ§π πππ«ππ‘π€π₯ππ§π¨ in basic + translational neuroimaging @WesternU.π§ π Supported by @TRIDENTPCT @Brains_CAN. https://t.co/dPheXyh4RS [Job ID: 35643 + 35752] #ldnont π¨π¦
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Potential dev will include #hippunfold, #snakemake, @BIDSstandard, & @afids_project among other projects with integration into preclinical and clinical applications. π§ π― Check out: https://t.co/mLxTNnGiQn
https://t.co/ESwEIhzEbS
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NeuroVault is celebrating over a decade of researchers openly sharing brain maps! π§ We're looking back at the amazing growth & what's next. But first... π¨We need your help! π¨ Take our survey to shape the future of NeuroVault & data sharing! https://t.co/PZU9lcwFDE
tally.so
Made with Tally, the simplest way to create forms.
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Do you use fslmaths for image processing? In our latest publication, Rorden et al. introduce niimath, a clone that offers performance optimization, improved portability, and open licensing https://t.co/A8paK31nbI
@OHBM @fMRI_today @mallarchkrvrty1
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so delighted to see this published in @ApertureNeuro! Send papers about your tools! Send papers about your open datasets! Send papers about your science! Support the journal developed by @OHBM for the whole community (all with a low low APC!!!).
Do you use fslmaths for image processing? In our latest publication, Rorden et al. introduce niimath, a clone that offers performance optimization, improved portability, and open licensing https://t.co/A8paK31nbI
@OHBM @fMRI_today @mallarchkrvrty1
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Ever wondered about the current state of registration accuracy for #DBS electrodes in "MNI" space?π§ π― Some have used voxel overlap, but to our knowledge, there have not been any millimetric estimates.π Check out @MohamadAbbass19's deep dive.π€Ώ Comments/suggestions welcome!π
Check out our latest #preprint investigating the millimetric impact of localization & registration accuracy on DBS electrode position in stereotactic space.π― https://t.co/t0swscQcJz Powered by: @afids_project @leaddbs #fMRIprep @3DSlicerApp @BIDSstandard [1/9]
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Fantastic work of great importance!! ππ
Check out our latest #preprint investigating the millimetric impact of localization & registration accuracy on DBS electrode position in stereotactic space.π― https://t.co/t0swscQcJz Powered by: @afids_project @leaddbs #fMRIprep @3DSlicerApp @BIDSstandard [1/9]
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Finally, it is important to emphasize transparent & open software development, specifically @leaddbs, #fMRIprep, @BIDSstandard, w/ @afids_project & data ( https://t.co/JOTiY02efl) making this analysis possible. #openscience #stereotaxy Data/scripts: https://t.co/IZ4XWPG9SR [9/9]
github.com
Data, code, and analysis for characterizing localization and registration errors during DBS using AFIDs - afids/afids-dbs
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The final version of the paper is now openly available @NeuroCellPress via
cell.com
Consciousness theories are hotly debated but can be misaligned in scope or approach, fueling discussions centered on differences. Storm etΒ al. argue that some seemingly insurmountable disagreements...
Like most neuroscientists, we have an opinion on consciousness. Our opinion: "Stop arguing apples aren't oranges and vice versa; use both to better understand fruit". The final paper will appear in @NeuroCellPress soon, but here's an early draft preprint for the impatient.
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Check out our latest #preprint investigating the millimetric impact of localization & registration accuracy on DBS electrode position in stereotactic space.π― https://t.co/t0swscQcJz Powered by: @afids_project @leaddbs #fMRIprep @3DSlicerApp @BIDSstandard [1/9]
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Check out HippoMaps at https://t.co/JIkKRcuTHC with @BorisBernhardt @acehigh1952 @donna_gift @J_Royer_ @neuroak @BradKarat @sofievalk @JustineYHansen @misicbata @MarkusAxer @TheNeuro_MNI et al
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We mapped the connectivity of brainstem pathways that sustain human consciousness. A decade in the making... Preprint: https://t.co/NXoIOiTaSV Ex vivo MRI: https://t.co/e7nTwe07r4 Histology: https://t.co/alS3AkDTF5 Atlas: https://t.co/c4FWUM5PIA Code: https://t.co/GqwNx6n2Ru
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