David Barnett
@_david_barnett_
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PhD student | microbiome research (human, gut, infant) #Rstats | data visualization | microViz - R package and Shiny app
Maastricht
Joined December 2017
What effect do #prebiotics have on infant gut #microbiota resilience after antibiotic exposure? @MF_Endika @_david_barnett_ @hauke_smidt et al. use a cool in vitro colon model in
frontiersin.org
Antibiotic exposure disturbs the developing infant gut microbiota. The capacity of the gut microbiota to recover from this disturbance (resilience) depends o...
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Great experience last week, being part of the @evomics workshops again! 🤩 I highly recommend joining the next edition in Jan 2024 ❄️ https://t.co/eIBpe57iu4 Gain a broad practical foundation in genomic bioinformatics 👩💻🧬 and also have fun in an inspirational environment! 🥳🏞️
evomics.org
Hold the Date! The Workshop on Genomics 2026 will be held from the 11th to the 24th January in Český Krumlov, Czech Republic The Workshop on Genomics was developed ...
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Human milk oligosaccharides, antimicrobial drugs, and the gut microbiota of term neonates: observations from the KOALA birth cohort study Speaker: David Barnett https://t.co/RkgG8kBwT9
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Hooray! 😁Thanks to collaborators on this work especially @MF_Endika @WUR and my supervisors @artsilja & @penderslab at @MaCSBio & @MMI_MUMC 🙏 And thanks to the organisers of MVIF! I highly recommend attending the next editions of these free online microbiome events!
Congratulation to the #MVIF #17 winners!!! 🇳🇱@_david_barnett_ HMOs, antimicrobials & neonate microbiome 🇯🇵 @ryzary25 AI for microbiome & CRC *besides the fame, there's a $200 prize to the prize winners, so make sure to vote and to submit an abstract for next time!
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⏰In less than 16 hours for Pacific time zones! Check your local time & date ⬇️ Yesterday we had a great Atlantic event, join our speakers to discuss their works! 🤩
March #MVIF program is out🤩 Keynote 🇺🇸Prof. Dominguez-Bello (@RutgersU) Talks 🇳🇱@_david_barnett_ 🇩🇪@AnkurMidha3, @vhjarquind 🇪🇸@alvarordr Highlights 🇯🇵Ryza Rynazal 🇮🇹@paolo_manghi 📆Time&date (different from usual) https://t.co/OP4LTcMZpf ✍️Register https://t.co/FxZqztDZOC
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We’re “pivoting” Elicit with GPT-4 😉 Elicit in 2022 took unstructured text in papers and structured it into a table. Elicit in 2023 will take this structured text and enable you to “pivot” it, grouping it by concepts. Sign up here: https://t.co/9hyYcQHB04
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NEXT, #MVIF selected talks: ⭐️HMOs, antimicrobials & neonate microbiome 🇳🇱@_david_barnett_
https://t.co/7ze5xLqFBa 1/3
First paper of 2023 is out in #GutMicrobes! HMO's, antimicrobials and the neonatal gut microbiota👇 https://t.co/xMMQLXIVp6 Big congrats to 1st authors @_david_barnett_ @MF_Endika and thx to great collab with @MaCSBio @WUR Food Chemistry @MIB_WUR @MaastrichtUMC and many others
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🤩In 24 hours for Atlantic time zones and in 60 hours for Pacific ones!🦠🧫🧬 Check your ⏰local time and date, add to 📆your calendar, and read the 📖full program here ➡️ https://t.co/uFtTDoxniM Registration (free!)➡️ https://t.co/pXwPjzQKYo Thanks @QIAGEN for the support! 🙌
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Congratulations to our PhD student @_david_barnett_ for winning the Amrapali Zaveri Award for Early Career Data Scientist 2023! 🥳
Meet the Amrapali Zaveri Award for Data Science Winners 2023: @_david_barnett_, a @macsbio PhD student (ECR Award) Yaru Zhang, a @UM_DACS Master student (Future Data Scientist Award) Congratulations 🎉 #umdatascience #datascience #azawards
https://t.co/nJ210bQ6JX
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Next week! 📆 #MVIF will cover: ⭐️early life microbiome ⭐️HMOs, antimicrobials & neonate microbiome ⭐️gut parasites microbiome ⭐️characterizing unknown genes ⭐️AI for microbiome&CRC ⭐️microbiome meta-analysis resource Registration link and local time&date ⬇️
March #MVIF program is out🤩 Keynote 🇺🇸Prof. Dominguez-Bello (@RutgersU) Talks 🇳🇱@_david_barnett_ 🇩🇪@AnkurMidha3, @vhjarquind 🇪🇸@alvarordr Highlights 🇯🇵Ryza Rynazal 🇮🇹@paolo_manghi 📆Time&date (different from usual) https://t.co/OP4LTcMZpf ✍️Register https://t.co/FxZqztDZOC
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March #MVIF program is out🤩 Keynote 🇺🇸Prof. Dominguez-Bello (@RutgersU) Talks 🇳🇱@_david_barnett_ 🇩🇪@AnkurMidha3, @vhjarquind 🇪🇸@alvarordr Highlights 🇯🇵Ryza Rynazal 🇮🇹@paolo_manghi 📆Time&date (different from usual) https://t.co/OP4LTcMZpf ✍️Register https://t.co/FxZqztDZOC
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👉Important message: a striking lack of correlation between #pathway abundance🦠and plasma #metabolite levels🩸(cohort, n=1055), emphasising that gene abundances in gut metagenomes are not (on their own) a useful predictor of plasma metabolic outputs. https://t.co/O1MQrztBZ0
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I am excited to share the preprint of my first postdoc paper (with @blekhman @frankwalbert @DemerathE), “Human milk variation is shaped by maternal genetics and impacts the infant gut microbiome” !!! https://t.co/XNUNQETAd5 This project began…
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New PhD vacancy on clinical decision support for precision medicine at our Euregional Microbiome Center partner Prof. K. Van Steen @UniversiteLiege Check it out 👇 https://t.co/1XMfKANQEf ##MSCA Doctoral Networks #MachineLearning
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"The person-to-person transmission landscape of the gut and oral microbiomes". Our work on microbiome stransmission published today open-access in @Nature! Fantastic work @MireiaVallesc, the whole @cibiocm group @CIBIO_UniTrento and all the collaborators!
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The very first 2023 @MicrobiomDigest 👉 https://t.co/adH8PxkWHM cardio /@HamdiAJama @dakotarrj KOALA /@_david_barnett_ @MF_Endika cheese /@christinacsaak SemiBin2 /@ShaojunPan & invitation for @MicrobiomeVIF!
microbiomedigest.com
The very first 2023 digest features HMOs, antimicrobials and the neonatal gut microbiota, cheese community, cow rumen microbiome, SemiBin2, and more. Happy Friday and see you next week at #MVIF! Fo…
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First paper of 2023 is out in #GutMicrobes! HMO's, antimicrobials and the neonatal gut microbiota👇 https://t.co/xMMQLXIVp6 Big congrats to 1st authors @_david_barnett_ @MF_Endika and thx to great collab with @MaCSBio @WUR Food Chemistry @MIB_WUR @MaastrichtUMC and many others
tandfonline.com
The infant gut microbiota affects childhood health. This pioneer microbiota may be vulnerable to antibiotic exposures, but could be supported by prebiotic oligosaccharides found in breast milk and ...
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1/5. Make collider bias make sense. (I'll try) Conditioning on a collider (variable caused by outcome and predictor) induces a noncausal association between the predictor and outcome. But why?
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Today @_david_barnett_ from @MaastrichtU is giving us a workshop on his #rstats package #microViz for #microbiome analysis. Got curious? 🔎 https://t.co/vTnBTDdXgB
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