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Y. Ryan Lu Profile
Y. Ryan Lu

@Y_Ryan_Lu

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Yuancheng Ryan Lu. I study the biology of aging and its reversal | K99-LSRF-AFAR Fellow at @WhiteheadInst in @JswLab | Prev PhD @ Harvard with @DavidaSinclair

Cambridge, MA
Joined July 2013
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
1/ Can we find more precise and even safer ways to rejuvenate vision? As a step towards this goal, I am excited to share this preprint of my 1st postdoc work from @JswLab with amazing collaborators, esp. @Bruce_Ksander! Using functional genomics, we discovered GSTA4 as a key OSK
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@Y_Ryan_Lu
Y. Ryan Lu
22 days
Congratulations, Ania! A wonderful contribution to solving the puzzle of aging metabolites in organelles. It’s been inspiring to witness your perseverance and a privilege to be a small part of this journey.
@AniaPuszynska
Ania Puszynska
22 days
Excited to share our work with @DMSabatini & @JswLab. How do lysosomes change with age? We present a metabolic atlas of lysosomal aging, and reveal a lysosomal “aging clock” of metabolites linked to lysosomal storage disorders. Grateful to all co-authors! https://t.co/HyP6zq3Ccq
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@ItaiYanai
Itai Yanai
1 month
Legend David Baltimore died yesterday. He understood the way things should work: "the real contribution of @MIT is that it doesn't take itself too seriously. It takes ideas seriously, but the people are relatively informal. They are not self-aggrandizing the way academics can be.
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@davidasinclair
David Sinclair
1 month
NEW DISCOVERY: Congrats to co-author & former PhD student @Y_Ryan_Lu for finding a new rejuvenation factor that reverses transcriptomic age & vision loss due to macular degeneration, a leading cause of blindness 👏
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biorxiv.org
Oct4, Sox2, and Klf4 (OSK) Yamanaka factors induce pluripotency and reverse age-related epigenetic changes, yet the mechanisms by which they promote rejuvenation remain poorly explored. Oxidative...
@Y_Ryan_Lu
Y. Ryan Lu
1 month
11/ Step 4: In vivo, AAV-GSTA4 rejuvenates aged RPE transcriptomes by 8.5 months (~50%) and improves vision (check bioRxiv sup. video)—without the long-term concern with OSK. Shoutout to Aleks from @gladyshev_lab for the tAge analysis.
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@JswLab
Jonathan Weissman's Lab
1 month
Exciting work from the lab, on the mechanism of OSK rejuvenation, led by @Y_Ryan_Lu with lab co-authors James Cameron, @MohamedBrolosy, @AniaPuszynska, @Xiaojie_Qiu.
@Y_Ryan_Lu
Y. Ryan Lu
1 month
1/ Can we find more precise and even safer ways to rejuvenate vision? As a step towards this goal, I am excited to share this preprint of my 1st postdoc work from @JswLab with amazing collaborators, esp. @Bruce_Ksander! Using functional genomics, we discovered GSTA4 as a key OSK
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@swangentr
Steven Wang
6 hours
Stock Market Week in Review: After a sharp fall to close the last trading week, we ended this one on a positive note. - The S&P is up +0.51%, - Nasdaq ended the week 0.45% higher - DJI gained the most, +1.08% for the week To start the week, U.S. and Chinese representatives
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
19/ This discovery journey had no shortage of challenges, yet the outcome exceeded expectations—thanks to 29 incredible students, collaborators & mentors here! @DavidaSinclair has always been supportive. And Jonathan @JswLab + Bruce have been truly exceptional postdoc mentors,
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
18/ We believe many similar stem-cell-intrinsic anti-aging pathways remain to be found. By dissecting & deploying them, we can harness these early-life rejuvenation programs to combat late-life degeneration.
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
17/ Together, our work provides novel mechanistic insights into OSK-mediated rejuvenation, positions GSTA4 as a therapeutic target, and outlines a framework to deconstruct rejuvenation pathways with functional genomics.
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
16/ Our findings in RPE resonate with this, and further suggest that oxidative stress and the accumulation of 4-HNE play a causal role in driving this in the RPE, as GSTA4 counteracts EMT. It would be interesting to explore how broadly GSTA4 can reverse mesenchymal drift across
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
14/ Supplementing cells with precursors of glutathione (Glycine+NAC), the cofactor of GSTA4, can effectively mimic its oxidative protection in vitro. This opens another translational path in addition to AAV-GSTA4.
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
13/ GSTA4 is consistently upregulated across diverse lifespan-extending interventions suggesting a broader pro-longevity role and likely safety profile.
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
12/ Mechanistically, GSTA4 detoxifies 4-HNE, a lipid peroxidation byproduct that progressively accumulates in aging RPE. Unlike generic antioxidants that just mop up ROS, GSTA4 repairs the damage.
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
11/ Step 4: In vivo, AAV-GSTA4 rejuvenates aged RPE transcriptomes by 8.5 months (~50%) and improves vision (check bioRxiv sup. video)—without the long-term concern with OSK. Shoutout to Aleks from @gladyshev_lab for the tAge analysis.
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
10/ Step 3: Using ATAC-seq & a novel seq2PRINT method developed by @YanHu41082612 and @JD_Buenrostro lab, we showed OSK directly & dynamically regulates GSTA4 in non-persistent manner, consistent with what we saw for OSK’s protection. This pattern mirrors GSTA4 regulation in
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
9/ Step 2: We performed transcriptomic profiling across the above 3 systems to identify shared OSK-induced gene changes. Correlating each gene’s expression with functional protection across lines nominated 6 top candidates, which were subjected to targeted gain-of-function
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
8/ Step 1: Aging RPE shows increased oxidative stress; we found that AAV-OSK boosts resistance & restores vision but prolonged use impairs ERG; In vitro, OSK confers broad oxidative protection (esp. vs NaIO₃ in RPE and fibroblasts). Interestingly, the protection is via a
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
7/ We focused on retinal pigment epithelium (RPE)—cells under oxidative stress whose decline drives AMD (Age related Macular Degeneration), affecting >200M people. Unlike retinal neurons, RPE can be cultured and offer oxidative stress resistance as a screenable phenotype.
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
6/ Due to the large number of genes impacted by OSK(M) treatment, we used functional genomics to search for OSK(M) effectors that are sufficient to mediate rejuvenation effects.
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@RFupdates
Reasonable Faith
7 days
William Lane Craig Reacts! Jordan Peterson & Church Hurt
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
5/ However ideally, for each application one would identify and utilize the specific downstream gene effectors of OSK that mediate each desired beneficial biological process. So far, only a few (e.g. Tet2 in retina, Top2a in liver) have been identified and these only work in
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@Y_Ryan_Lu
Y. Ryan Lu
1 month
4/ One strategy to mitigate these risks comes from my PhD work with @DavidaSinclair, where we and subsequent studies showed: using OSK (without oncogene c-Myc), rejuvenates retinal ganglion cells, restores vision in glaucoma & aging, is safe long-term, effective in MS models &
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