S. Stephen Yi
@StephenYiLab
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Director of Bioinformatics and Faculty Member; Passionate about functional genomics, systems biology, gene regulation and cancer.
Texas
Joined January 2021
Great honor to have breakfast with Senator Kay Bailey Hutchison @kaybaileyhutch, Drs. Brendan Lee (BCM), Michael Brown (UTSW), David Daniel (UTD), sharing honor with other winners @AaronBecker, Paola Passalacqua and Matt Sieber @sieber_lab
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So honored to be selected as a winner of protege poster challenge @TAMESTX @UTAustin, celebrating TAMEST's 20th anniversary (AI/ML theme), with brightest minds @theNASEM @theNASciences @theNAEng @theNAMedicine members in Texas!
Breakfast this morning with @TAMESTX winners of poster contest , making complicated explanations better! Winners from @UTAustin @UTSouthwestern @UHouston !
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TAMEST Mary Beth Maddox Committee Chair Ralph DeBerardinis, @UTSWNews, presents Nidhi Sahni, Ph.D., @MDAndersonNews, with the 2024 TAMEST Mary Beth Maddox Award. #TAMEST2024
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Kudos to Dr. Sahni, my wife, for this amazing award @TAMESTX! Well-deserved for her significant contributions to cancer research! https://t.co/e3L6kNwGlN
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Breakfast this morning with @TAMESTX winners of poster contest , making complicated explanations better! Winners from @UTAustin @UTSouthwestern @UHouston !
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Cancer scholars/researchers got together to brainstorm and inspire CPRIT & community about emerging & exciting opportunities in cancer research using computational/modeling/AI methods!
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Thrilled & Inspired to co-chair first-ever Computational Oncology #CPRITSymposium with Tom Yankeelov @UTCompOnco, covering the Cancer Continuum(Prevention->Detection->Treatment) STRONG support from @CPRITTexas #LivestrongCancerInstitutes @OdenInstitute @UTAustin & @MDAndersonNews
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Proud to work with a fantastic team 3A (Pink Panthers): @joshuagruber (UTSW), @fu_jingxin (Harvard/Broad), Sherry Zong, @tamzid999, Lucas Bartel, Sadik Yildiz! And many thanks to Komen folks @jourquin, Grace Nicholl, @e_jess, Aron Parekh!
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Honored & excited to lead Team 3A @SusanGKomen to a Winning Prize in the First ever #Hackathon to focus on #BigData challenges in breast cancer #BD4BC. Incredible experience! Special thanks to the great funders @LHBioinf_UTSW/@utswcancer in UT Southwestern, Dallas, TX!
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Congratulations to Stephen Yi @StephenYiLab and Ruixuan Gao @Ruixuan3 @ChemistryatUIC @UIC_BioS @UICLAS @thisisUIC for “In Situ Protein Sequencing by Multiplexed Real-Time Single Molecule Imaging.”
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We are happy to share the great news that @RCSA1, CZI @cziscience, the Cottrell Foundation & Walder Foundation just awarded us as one of 10 multidisciplinary teams, in a new Scialog initiative!!!
RCSA, @cziscience, the Frederick Gardner Cottrell Foundation & Walder Foundation have made #Scialog: Advancing BioImaging awards to 10 multidisciplinary teams of early career researchers working to develop the next generation of imaging technologies. https://t.co/0vpYJvWHBT
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RCSA & @MooreFound announce awards of $1,320,000 to nine teams in the final year of #Scialog: Chemical Machinery of the Cell, an initiative launched in 2018 to advance fundamental understanding of chemical machinery and reactions in the intact cell.
rescorp.org
Research Corporation for Science Advancement and the Gordon and Betty Moore Foundation announce awards of $1,320,000 to nine interdisciplinary teams in the final year of Scialog: Chemical Machinery…
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Congratulations to Jan-Hendrik Spille @LabSpille @thisisUIC @UICLAS and Stephen Yi @StephenYiLab for “Visualizing Inheritance through the Lens of Phase Separation.”
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Check out our paper "e-MutPath: computational modeling reveals the functional landscape of genetic mutations rewiring interactome networks"- new computational tool to systematically assign functions to genetic mutations in networks! https://t.co/Qa2jG14z9R
academic.oup.com
Abstract. Understanding the functional impact of cancer somatic mutations represents a critical knowledge gap for implementing precision oncology. It has b
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Check out our new paper, "isoCirc catalogs full-length circular RNA isoforms in human transcriptomes". We report a nanopore long-read sequencing strategy and companion computational pipeline to characterize circular RNA isoforms of human genes.
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Interesting approach to use scRNA-seq T cell expression to augment the analysis of TCR repertoire analysis from scTCR-seq https://t.co/da93isXWSA. This would get T cells targetting shared tumor antigens, so probably find more CD4 than CD8 effector T cells.
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Check out our recent "cancer immunome" work devising an integrative network model to identify potential immunomodulatory drug candidates, in collaboration with @SGailEckhardt @LilabUtsw @SahniLab Cathy Wu (DFCI), Gordon Mills (OHSU) https://t.co/mzO1A3dRe5
https://t.co/VVecTwLIgx
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Ishaani Khatri (Moncrief Fellow) in the lab just won a major National Undergraduate Research Prize! Congratulations! https://t.co/z51DfWFFxT
https://t.co/iNPsd8Ph1X
https://t.co/sV2wmpyPLj
quantitativebiology.northwestern.edu
The NSF-Simons Center for Quantitative Biology’s Prize for Undergraduate Research in Quantitative Biology recognizes outstanding undergraduate research in quantitative biology. This year five fina…
Congratulations to the 2020 Prize for Undergraduate Research in Quantitative Biology Winners. 1st place: Riley Jueneman, Tulane University; 2nd place: Ishaani Khatri, Brown University; 3rd place: Amber Park, Davenport University. #prizeugradresearchinqbio
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It is a special year, but we are grateful to do science, especially at the challenging time! This couldn't be possible without talented postdocs, students, and collaborators! Happy New Year to you all !
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