Stemformatics
@Stemformatics
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Stemformatics is a web based tool that allows stem cell biologists to visually analyse and explore interesting 'omic datasets.
Melbourne, Victoria
Joined January 2012
Have you seen the new https://t.co/SXIDfBsQ4m integrated transcriptome atlases for blood cells? https://t.co/edtu9OcCj2
#DataScience #RNA #Blood #CellClassification #GeneExpression
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Will be speaking on single-cell analysis of stem cell reprogramming!
Join us for the next National Stem Cell Conversations on Wed 3rd November 2021 at 11am AEDT featuring A/Prof Jess Mar @jessicacmar and Dr John F. Ouyang @imouyang discussing “Computational Methods in Stem Cell Research”. @StemCellsAus
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Thank you @mincle @Stemformatics @jarnychoi Our multi-disciplinary team of research data specialists throughly enjoyed working with you and we are thrilled to see the new portal! We look forward to more opportunities in the future! @MDAP_Unimelb
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Always love talking about @ExpressionAtlas
The final invited speaker of the day is Irene Papatheodorou @irenepapatheodo from @emblebi. Her talk is about the Single Cell Expression Atlas https://t.co/Bv95w9CALN which covers many species and biological conditions. #HIBIT2021
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Our perspective piece on the @humancellatlas 'A roadmap for the Human Developmental Cell Atlas' is out now, *open-access*: https://t.co/j0B1ARtMxD. A learning curve! Provided me with much needed space to learn from leaders in this field and think on the bigger picture
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Excited to share that human Dendritic Cell atlas has been revealed by the updated version of @Stemformatics . It's coming from the first year of my PhD research. Check it out!
We've built collections of transcriptome data from whole blood to tissue myeloid biology or dendritic cell subsets
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We're hiring! Do you have a PhD or equivalent experience in a #dataIntensive #research field in the #Humanities and #SocialSciences? Then join the most amazing #interdisciplinary and #collaborative team of academics (not biased at all😜) Find out more:
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so we welcome suggestions and feedback - contact us on the site, or via @jarnychoi or @mincle
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Stemformatics was developed for collaborative communities, initially for @StemCellsAus and now with @Synnate1
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Find out how similar your data is to the curated samples in the blood, myeloid or DC atlas (we use capybara, https://t.co/Gx3Ghbt3n1)
biorxiv.org
Transitions in cell identity are fundamental to development, reprogramming, and disease. Single-cell technologies enable the dissection of tissue composition on a cell-by-cell basis in complex...
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Use the curated bulk data to annotate immune cells in your single cell datasets - easy to follow vignettes on the https://t.co/w2L2a04hRi site
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subset experimental categories to reveal reproducible expression patterns - like IL6 production by macrophages, but not some dendritic cell subsets, in response to gram-negative bacteria
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You can explore gene expression across the hundreds of samples that contribute to our curated atlas collections https://t.co/w2L2a04hRi
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We've built collections of transcriptome data from whole blood to tissue myeloid biology or dendritic cell subsets
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We updated our data explorer with help from @MDAP_Unimelb - interactive categories, quickly get to the details of our curated metadata.
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You can find tissues where your gene of interest is most commonly observed https://t.co/w2L2a04hRi
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