Jarny Choi
@jarnychoi
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Bioinformatician at St Vincent's Institute. Can make nice looking plots.
Joined March 2015
Visualise RNA isoforms with IsoVis: https://t.co/xkRuTHC8zs. Work of 2 hard working masters students in the @ClarksysCorner lab over several years.
academic.oup.com
Abstract. Genes commonly express multiple RNA products (RNA isoforms), which differ in exonic content and can have different functions. Making sense of the
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A new statistical method developed by our PhD student Yidi Deng, in collaboration with @mixOmics_team. Designed to select stable/unstable features from omics data, with respect to a change in some environment (batch, disease, cell type, etc):
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What to do during a Covid lockdown in Melbourne for nerds: rewrite a data portal from scratch. https://t.co/a1jY7hnYAd.
@Stemformatics @mincle
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I talked to Nick only a month ago in Parkville. He was so happy about his recent move to CSL and his voice was full of optimism for the future. Deeply saddened. #notonlyabioinformatician
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I was lucky enough to be a part of this epic work in the Taoudi lab at @WEHI_research, which has finally been published: https://t.co/r4TCxJJzrG. A huge testament to @BibenChristine and Samir Taoudi for their sheer determination and persistence over many years.
nature.com
Nature Communications - The lineage relationship between blood and endothelial cells has been difficult to examine due to the multiphasic timing of hematopoiesis in the embryo. Here the authors use...
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New tool to explore cell identity in #singlecellsequencing against bulk sequencing data! @dydlzx @jarnychoi @mixOmics_team "Sincast: a computational framework to predict cell identities in single-cell transcriptomes using bulk atlases as references":
academic.oup.com
Abstract. Characterizing the molecular identity of a cell is an essential step in single-cell RNA sequencing (scRNA-seq) data analysis. Numerous tools exis
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Quite a detailed article on the history of publishing in science: https://t.co/9JfyfpSsft
theguardian.com
The long read: It is an industry like no other, with profit margins to rival Google – and it was created by one of Britain’s most notorious tycoons: Robert Maxwell
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