Expression Atlas
@ExpressionAtlas
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Expression Atlas and Single Cell Expression Atlas are @emblebi open science resources for #Gene and #Protein Expression. Follow us for release news & tips
Cambridge, England
Joined April 2016
Our latest @NAR_Open update paper is live! 🚀 Dive into the innovative features - query metadata via cell type wheel search, navigate data with tSNE/UMAP, and explore anatomograms & heatmaps. A new level of exploration!🧬🔎#DataScience #Research @emblebi
https://t.co/m95dNRDhd7
academic.oup.com
Abstract. Expression Atlas (www.ebi.ac.uk/gxa) and its newest counterpart the Single Cell Expression Atlas (www.ebi.ac.uk/gxa/sc) are EMBL-EBI’s knowledgeb
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🚀 Expression Atlas Release 43 is live! 🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns. 🔎 Plus, a new technology filter for faster dataset discovery. 🔗 https://t.co/LaToqH7Qrl
@emblebi
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We are looking for an ESPOD postdoctoral fellow in collaboration with @HaniffaLab to develop an Interactive Visualisation and Conversational AI Tools for Spatial Transcriptomics Data. https://t.co/z0nfXeroec
@emblebi @sangerinstitute
ebi.ac.uk
The ESPOD fellowship builds on the collaborative relationship between EMBL-EBI and the Wellcome Sanger Institute, offering projects that combine experimental (wet-lab) and computational (dry-lab)...
Recruitment is now open for the EMBL-EBI–Sanger Postdoctoral (ESPOD) Programme. ESPOD builds on the collaborative relationship between EMBL-EBI and @sangerinstitute, offering projects that combine experimental and computational approaches. https://t.co/jQ2W30FfyJ
#postdocjob
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Interested in spatial transcriptomics, interactive visualisation, and AI? We’re teaming up with @HaniffaLab and @saezlab on Project 5 - for someone keen to build open tools that make complex biological data more accessible! Apply by 30 Sep: https://t.co/rhR4HzJl8Q...
Recruitment is now open for the EMBL-EBI–Sanger Postdoctoral (ESPOD) Programme. ESPOD builds on the collaborative relationship between EMBL-EBI and @sangerinstitute, offering projects that combine experimental and computational approaches. https://t.co/jQ2W30FfyJ
#postdocjob
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Did you attend @iscb's ISMB/ECCB 2025 in Liverpool? Colleagues from across @emblebi (including reps from #Ensembl, @deciphergenomic, @EBItraining, @PDBeurope and @ExpressionAtlas) surely did! What was your highlight of the conference? 🧬
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Exciting news! The latest @ExpressionAtlas bulk release is out, featuring 4562 datasets across 67 species. Explore 12 new plant datasets from sorghum, rice, Arabidopsis and maize, 🌾🌽 contributed by our @GrameneDatabase collaborators. Don't miss out! 🧬
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The Functional Genomics Team at @emblebi is open to hosting #ARISE2 fellows! If you're interested in research infrastructure we welcome project ideas that support transcriptomics data reuse - incl. spatial, single-cell, or AI-ready infrastructure. https://t.co/EJzDDHzJKN
embl.org
Career Accelerator for Research Infrastructure Scientists
📢 Applications are now open for the #ARISE2 Fellowship Programme! With funding from @MSCActions, the programme trains scientists to become leaders in research infrastructures and innovate in the #LifeSciences. Apply here: https://t.co/ab3IKgiXvF
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We are seeking a Scientific Database Curator at @emblebi in collaboration with the @saezlab and @GSK. This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources Deadline 20 July
We have a curator position at @emblebi to work with GSK within a project to understand fibrotic processes (no PhD required). Deadline 20th July. Please share 🙏 https://t.co/NH2C4Wmv4l
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If EMBL-EBI data resources have saved you time & effort, now is your chance to give back! Fill in a 15-minute survey to help us: 🌍Demonstrate the real-world impact of these resources 🧠Understand your needs 🌟Secure continued funding Closes 16 July 👉 https://t.co/ASEE7NUA1m]
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Our bioinformaticians @AnilThanki, @irisdianauy, and @compBiology will be attending #ISMBECCB2025! Catch our talks and posters on @ExpressionAtlas, @Bioconductor, and @PersistSeq
#ISMBECCB #ISMB #ECCB #singlecell
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This week, our team will be attending the Spatial Transcriptomics & Proteomics event on March 5-6 at @AstraZeneca Discovery Centre !🧬 If you’re attending too, we’d love to connect, feel free to reach out to our team! #SpatialBiology #Proteomics #Networking @emblebi @EBItraining
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Thank you to everyone who attended the @ELIXIREurope #SpatialTranscriptomics FAIR Data Management Workshop over the last two days, both @emblebi and online! The discussions on metadata & data standards, archiving, and data retrieval were productive and insightful. #FAIRdata
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The bioinformatics arm of the Functional Genomics Team and @ExpressionAtlas will participate in the @nf_core #hackathon at the @wellcomegenome Campus Check out our challenge and join us, everyone is welcome! @emblebi
@sangerinstitute
#nextflow
#singlecell
We've just put up the first batch of local sites for the upcoming @nf_core #hackathon (March 2025) on the website: https://t.co/AFLFzsrxX2 We've had a great response so far, with 23 sites (a record!), but we'd love more! Are you able to book a meeting room for a local site?
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Excited to invite you to the Spatial Transcriptomics FAIR Data Management Workshop on Feb 26-27 at EMBL-EBI (hybrid)! Join us to discuss metadata & data standards, archiving, and data retrieval. Agenda & registration:
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We're excited to announce that we're now on @bluesky! Follow us at https://t.co/e8XvUrUBds for updates and join the conversation. #BlueSky #NewBeginnings
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Excited to announce that 15 new human proteomics datasets are now available in our latest bulk release, thanks to our collaboration with @pride_ebi! Learn more in our recent publication: https://t.co/Y74Lir9W9p 🧬 #Proteomics #Research
pubs.acs.org
The PRIDE database is the largest public data repository of mass spectrometry-based proteomics data and currently stores more than 40,000 data sets covering a wide range of organisms, experimental...
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From the Functional Genomics team at @emblebi, we extend our warmest wishes for a joyous holiday season filled with cherished moments and success in the New Year. 🎄 #MerryChristmas2024 #MerryChristmas
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Welcome @ChristinaErnst_ !
Welcome, Christina Ernst, our new Functional Genomics Team Leader! Find out about Christina’s plans to develop standards for new data types using AI. https://t.co/9tCwekvttc
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Silvie & Liora from our team are attending the @SpatialBio meeting today, working towards establishing standards in spatial transcriptomics. Want to contribute? Share your thoughts through this short survey: https://t.co/lztr7TUA2M
#SpatialTranscriptomics
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Exciting news! The latest @ExpressionAtlas bulk release is out, featuring 4476 datasets across 66 species. Explore the newest EDTL dataset by @DIAMONDS_2020 and check out 15 new human proteomics datasets from our collaboration with @PRIDE_EBI at @EMBLEBI. Don't miss out! 🧬
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Meet @irisdianauy, our bioinformatician! She actively contributes to the analysis workflows and production pipelines for transcriptomics for the @ExpressionAtlas. She is also Co-organiser and trainer in single-cell RNA-seq analysis trainings with @ebitraining
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