Siyu He
@SiyuHe7
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Postdoc @stanford | PhD @columbia | AI4Biomedicine | Computational cancer biology | spatial biology | statistical machine learning
Joined January 2019
Thrilled to introduce #CORAL🪸—a deep probabilistic graphical model that integrates spatial multiomics data! .🔹Resolves spatial resolution discrepancies across modalities.🔹Deconvolutes low-res data to achieve single-cell granularity.🔹Enables parallel integrative analysis 1/🪸
Learning single-cell spatial context through integrated spatial multiomics with CORAL #biorxiv_bioinfo.
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RT @naveedtavakol: Join us this fall for a Cold Spring Harbor Lab meeting (Sept 28 - Oct 1, 2025) on "Bioengineered Tissue Systems & Models….
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RT @qianru9016: Excited to share our new paper in @NatureCVR!!.We decoded how genes team up through epistasis to drive cardiac hypertrophy.….
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RT @shi_lingting: 5/ 🧬.🧪 We developed StarfyshHD, a #spatialtranscriptomics analysis tool tailored for #VisiumHD data to integrate multiple….
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RT @james_y_zou: >700K people die each year due to S. aureus infection. Today we show that our AI designed new molecule, synthecin, stops….
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RT @Cancer_dynamics: Missed the #CompSpatialBio seminar (@justjhong) with @SiyuHe7 on CORAL—a deep graph model for spatial-omics? The recor….
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RT @justjhong: For our third Computational Spatial Biology seminar, we will speaking with @wencksternjo about VirTues, a foundation model f….
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Thanks @justjhong for the invitation! Looking forward to the discussion.
For our next Computational Spatial Biology seminar, we will talking with @SiyuHe7 about CORAL, a deep graph generative model learning integrated representations of multimodal spatial-omics data. Tune in next Wednesday, April 30 @ 12PM ET!.Full schedule:
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RT @Cancer_dynamics: 🚨 Deadline Extended!.Apply for the IICD Intensive Workshop by April 21st! .🔬Open to grad students & postdocs .📅 June 2….
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Thank you so much @labenz !! It was an amazing conversation with #cognitiverevolution podcast. Please check more details of #Squidiff and #CORAL here🤩🤩🤩.
Applications of AI to frontier biology endlessly fascinate me. Here's @SiyuHe7 talking about Squidiff, a model that runs experiments in silico by predicting how single cell transciptomes will respond to perturbations. This can save researchers months!.
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RT @justjhong: To kick off the Computational Spatial Biology seminar series with @nathan_levyy, we will be discussing LUNA with @yistyu. LU….
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RT @justjhong: Excited to announce a webinar series I'm hosting with @nathan_levyy starting April 9! With the release of many exciting new….
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RT @ShengLiu_: 🔥Our new #ICLR2025 spotlight paper on reducing MLLMs hallucinations. ⭐️We found vision encoders in MLLMs are very sensiti….
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RT @james_y_zou: 📢 Our new #ICLR2025 spotlight paper unveils mechanistically how vision-language models hallucinate + finds a simple fix ht….
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RT @zhou_jingtian: 1/10 Excited to share our latest - the first whole-body map of both DNA methylation and 3D genome at single-cell resolut….
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RT @ShengLiu_: 🚀 I’m thrilled to announce that #textgrad has been published in @Nature today! It’s been an incredible journey working with….
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RT @james_y_zou: ⚡️Really thrilled that #textgrad is published in @nature today!⚡️. We present a general method for genAI to self-improve v….
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RT @GVNlab: Check out our new collaborative work with Dr. Kam Leong @columbiabme @theleonglab out in Advanced Functional Materials! We deve….
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RT @james_y_zou: #SIRIUS is a powerful approach to optimize multi-agent #LLMs + compound #AI systems. 🤖. It identifies which trajectories a….
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RT @james_y_zou: Excited to share #CORAL, a versatile deep probabilistic model to integrate disparate modalities of spatial biology!🚀 .Wond….
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