Sebastian Triesch
@SebTriesch
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Biochemist | Düsseldorf | PhD Student @WeberLab_HHU @ceplas_1
Nordrhein-Westfalen, Deutschland
Joined July 2016
Last one from my PhD @WeberLab_HHU! We show bundle sheath function in C3-C4 intermediate Moricandia by single-nuclei sequencing. Now off to new adventures at @WGGC_de
Single-nuclei sequencing of Moricandia arvensis reveals bundle sheath cell function in the photorespiratory shuttle of C3-C4 ... https://t.co/wh97w4rrOv
#biorxiv_plants
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Single-nuclei sequencing of Moricandia arvensis reveals bundle sheath cell function in the photorespiratory shuttle of C3-C4 ... https://t.co/wh97w4rrOv
#biorxiv_plants
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🚀 Exciting new research alert! Check out "Predmoter - Cross-species prediction of plant promoter and enhancer regions" 🌿. This deep learning tool predicts ATAC-seq and ChIP-seq read coverage from DNA sequences, reducing cost and time in plant genomics! Read more:
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Peer-reviewed version finally out: Predmoter—cross-species prediction of plant promoter and enhancer regions
academic.oup.com
AbstractMotivation. Identifying cis-regulatory elements (CREs) is crucial for analyzing gene regulatory networks. Next generation sequencing methods were d
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A week left to apply! 🚨 I’m looking for a research technician to join us @OxfordBiology and to help set up an efficient transformation pipeline in the C4 species Gynandropsis. Come work with us on leaf anatomy and photosynthesis! 🌱🪴 Find out more 👇 https://t.co/nuFLg0LC6u
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Our paper on the dissection of three light-responsive plant enhancers is out: https://t.co/fnsBgKKsHs My favorite finding: the enhancers rely on suboptimal transcription factor binding sites. This is consistent with the beautiful work on animal enhancers from @EKFarley
academic.oup.com
Cooperative and additive interactions among functional regions harboring transcription factor binding sites control the activity of 3 light-responsive plan
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I‘m proud to have received the Reinhold von Sengbusch Award by @PlantScienceDBG at last week‘s #mbp2024 conference! Thanks to my group @WeberLab_HHU for your great input preparing my talk!
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Great work @Pabster212! Investigating the cis-Regulatory Basis of C3 and C4 Photosynthesis in Grasses at Single-Cell Resolution
biorxiv.org
While considerable knowledge exists about the enzymes pivotal for C4 photosynthesis, much less is known about cis- regulation important for specifying their expression in distinct cell types. Here,...
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Transposable elements contribute to the establishment of the glycine shuttle in Brassicaceae species - Triesch - Plant Biology - Wiley Online Library https://t.co/MV7PEYfOw4
@SebTriesch @JBouvierPlants @Steve__Kelly @AlisandraDenton @SchluterUrte @vReichel_Deland
onlinelibrary.wiley.com
Brassicaceae species with C3-C4 intermediate photosynthesis show an enrichment of transposons upstream of photorespiratory genes, such as those encoding glycine decarboxylase proteins.
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Finally out, our paper on #transposons and their role in C3-C4 intermediate photosynthesis! https://t.co/chXMUB5TC8 Thanks to all involved! @WeberLab_HHU @apmweber @AlisandraDenton @vReichel_Deland @Steve__Kelly @JBouvierPlants
onlinelibrary.wiley.com
Brassicaceae species with C3-C4 intermediate photosynthesis show an enrichment of transposons upstream of photorespiratory genes, such as those encoding glycine decarboxylase proteins.
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'Brassicaceae display variation in efficiency of photorespiratory carbon-recapturing mechanisms' - Urte Schlüter, Jacques W Bouvier, Ricardo Guerreiro, Milena Malisic, Carina Kontny, Philipp Westhoff, Benjamin Stich, @apmweber 🌿 https://t.co/FADlhgjq7D
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I’m happy to share “Cooperativity and additivity in plant enhancers”, our newest paper out now on bioRxiv: https://t.co/1M0N0RCx9D We dissected three light-responsive plant enhancers and found evidence for cooperative and additive interactions between functional enhancer regions.
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When you work on a bunch of weird non-model species this kind of prediction is everything! Predmoter - Cross-species prediction of plant promoter and enhancer regions
biorxiv.org
Motivation The identification of cis -regulatory elements (CREs) is crucial for the analysis of gene regulatory networks in plants. Several next generation sequencing (NGS)-based methods were...
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#Predmoter deep neural network. input: genome sequence FASTA; output: prediction of ATAC- and Histone H3 trimethylated at lysine 4 (H3K4me3) ChIP-seq. Documentation/ download from: https://t.co/1PcnNjT5pC
@AlisandraDenton @SebTriesch @WeberLab_HHU @SchluterUrte @vReichel_Deland
github.com
Deep Learning application to predict NGS data. Contribute to weberlab-hhu/Predmoter development by creating an account on GitHub.
Predmoter - Cross-species prediction of plant promoter and enhancer regions https://t.co/oap2Xy2YPS
#bioRxiv
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Predmoter - Cross-species prediction of plant promoter and enhancer regions
biorxiv.org
Motivation The identification of cis -regulatory elements (CREs) is crucial for the analysis of gene regulatory networks in plants. Several next generation sequencing (NGS)-based methods were...
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The identification of CREs with Predmoter with only DNA sequence as input! 🤓
Predmoter - Cross-species prediction of plant promoter and enhancer regions
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You want to have cool ATAC and ChIP-seq data for your favorite plant genome but you don’t like pipetting? Check out Predmoter, our DL tool predicting open chromatin! (Yes, it works)
Predmoter - Cross-species prediction of plant promoter and enhancer regions https://t.co/Y3ywShxelE
#biorxiv_bioinfo
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Eager to delve into the role of metabolites in microbial communities? Join our team in the CRC 1535 as a PostDoc in the Metabolomics and Metabolism Laboratory! Let your expertise impact our research https://t.co/ZodW2enMKl
#PostDoc #Metabolomics #MicrobialCommunities
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A transcription factor module mediating C2 photosynthesis https://t.co/1ONRgK9C9B
#biorxiv_plants
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