RiboSeqOrg
@RiboSeqOrg
Followers
1K
Following
98
Media
2
Statuses
237
Analysis and visualization of ribosome profiling (#riboseq) data
Ireland
Joined August 2015
Introns, exons and now translons:
nature.com
Nature Methods - Translon: a single term for translated regions
0
1
1
A truly remarkable finding: https://t.co/ETbUrXbnfQ A tRNA decodes a base of rRNA that is normally used to verify the correct geometry of codon-anticodon pairing.
0
1
0
Ribosome profiling helps to reveal the first example of human mRNA translated in all three reading frames simultaneously:
0
4
14
A manuscript describing https://t.co/0oPzGld1bi is out in 2025 NAR db issue: https://t.co/QEtnylcV7w It introduced RiboSeq Data Portal:
academic.oup.com
Abstract. Ribosome profiling (Ribo-Seq) has revolutionised our understanding of translation, but the increasing complexity and volume of Ribo-Seq data pres
0
11
44
Are you a PhD/postdoc interested in posttranscriptional regulation of gene expression? #EMBORiboProf combines ribosome profiling theory with hands-on wet lab and bioinformatics training 🧪🥼💪🏼 📅 23 – 28 Mar 2025 📍 EMBL Heidelberg 📜 Apply by 21 Nov 👉🏼 https://t.co/fc7sTwr6OU
1
3
10
Delighted to see Ribosome Decision Graphs, our novel concept for the representation of translation complexity, published in Genome Research earlier this week. https://t.co/Cg8LwYOp7H
Ribo-Seq has unearthed thousands of fascinating cases of translation complexity over the last decade. Through the exploration of Ribo-Seq datasets it became clear that a more accurate representation is required to help us better understand this complexity. #Translation #RiboSeq
2
3
15
One month is left until the registration deadline for EMBO Workshop on Recoding and Diversity of Genetic Decoding: https://t.co/Jarlspsw6d
#EMBOrecoding
meetings.embo.org
The remarkable diversity of genetic decoding was unanticipated when it was first deciphered. Over the past fifty years, numerous variations have been discovered. These include variant genetic codes i…
0
7
11
A novel concept for representation of multiple translated regions in RNA:
0
6
18
There are thousands of frameshifting sites in ciliate Euplotes and their number continues to grow:
pnas.org
The triplet nature of the genetic code is considered a universal feature of known organisms. However, frequent stop codons at internal mRNA positio...
0
2
11
The CRT Genomics team is presenting https://t.co/GBM0aGKGme at EMBO practical course on ribosome profiling @GenomicsCRT #EMBORiboProf @EMBLEvents
0
3
19
A new tool at https://t.co/0oPzGlctlK: RyboCrypt ( https://t.co/KkRcqTP12T)
0
2
4
Trp-tRNA with a shortened anticodon stem reads UGA codon in an organism with all 64 codons specifying amino acids: https://t.co/D5GPuzqDJw and https://t.co/TfUnH2Cm2R
@NatureNV
nature.com
Nature - Analyses of in-frame stop codons in protein-coding genes of Blastocrithidia nonstop with all three stop codons reassigned reveal a mechanism for UGA reassignment in eukaryotes involving...
1
14
42
Thousands of expressed but unconserved N-terminally extended human proteoforms have been identified with RiboSeqOrg resources: https://t.co/XYfIsj2yeG
@GenomicsCRT @Triasteran @GencodeGenes
nature.com
Nature Communications - Analysis of a large number of Ribo-seq datasets and genomic alignments led to detection of novel non-AUG proteoforms. Unexpectedly the number of non-AUG proteoforms...
0
5
19
The number of known frameshifting cases in human genes is getting smaller:
0
4
18
About to enter the field of posttranscriptional regulation of gene expression? 👀 Then join #EMBORiboProf, where you will get a detailed theoretical and practical understanding of #ribosomeprofiling 🗺️EMBL Heidelberg 📥Apply by 11 Jan 🗓️26 Mar – 1 Apr 💻 https://t.co/RzFQmpGdlH
0
7
11
An international team led by Gencode plans to use ribosome profiling in genome annotations:
nature.com
Nature Biotechnology - Standardized annotation of translated open reading frames
0
58
350
RiboSeq reveals thousands of N-terminally extended proteoforms in humans
biorxiv.org
The synthesis of most proteins begins at AUG codons, yet a small number of non-AUG initiated proteoforms are also known. Here we used publicly available ribo-seq data with phylogenetic approaches to...
0
3
37
Научное сообщество создало постоянно обновляемый список лабораторий ( https://t.co/7g1jj2HUsa), которые могут принять украинских ученых (включая аспирантов).
docs.google.com
0
0
1