GencodeGenes
@GencodeGenes
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Human And Vertebrate Analysis aNd Annotation (HAVANA) team, part of the Ensembl group at the European Bioinformatics Institute.
Joined November 2011
The GENCODE Primary dataset is now displayed by default for human and mouse in @ensembl. More information about how this set is created is available here: and details on how to change the default display settings here:
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The latest human GENCODE releases for Human (48) and Mouse (M37), have just been released. They're available via and visible in .@ensembl genome browser as part of Ensembl 114
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We're pleased to share our GENCODE 2025 NAR database paper: Thanks to all our collaborators, friends and users. This is now the main citation for our resource, and hopefully also a good explanation of how and why we do what we do.
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3/ How do we interpret immunopeptidomics support in biological terms? How many of these ORFs are bona fide proteins as opposed to unstable peptides or aberrant products? What does this mean for annotation? These are open questions and our work continues. @genenames @uniprot.
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2/ Relatively few Ribo-seq ORFs have peptide support from tryptic digests, although substantial numbers are supported by immunopeptidomics data. Many thanks to our large number of collaborators @EricWDeutsch @r_l_moritz @johnprensner @s_heesch.
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1/ GENCODE continue to work on the annotation of non-canonical translations identified by Ribo-seq, and are pleased to support this preprint which examines which ORFs express protein products:
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RT @naturemethods: We are excited to publish our second-ever Registered Report! The #LRGASP Consortium evaluated various methods for transc….
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RT @anaconesa: I´m thrilled to see our #LRGASP paper published in @naturemethods today. This is the work of many to benchmark long-read met….
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RT @emblebi: DNA and RNA sequencing methods are rapidly evolving, each with its own benefits and challenges. Find out how the Long-read RN….
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Out today: the Long-read RNA-Seq Genome Annotation Assessment Project (LRGASP) paper, featuring contributions from many GENCODE members, a systematic evaluation of methods for long-read transcript detection and quantification:
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RT @aleenamolbio: We had an amazing attendance this morning for the @ensembl workshop at #ESHG2024 #berlin 🎉.@EBItraining @emblebi https:/….
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RT @_Rory_Johnson_: 🥳👇🧠Calling all RN-Aficionados! The deadline for #ncRNA2024 has been extended to 11 June. Remaining places are filling f….
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That might be a gin&tonic in my hand, but it still holds true that #recount3 is a wonderful resource and super useful in our annotation efforts! Great to meet you @lcolladotor!!.
Thank you Toby Hunt from @emblebi for agreeing to record this shoutout from @GencodeGenes to #recount3. Not every day do you get to hear praise from users! This is a hugely motivating!. #BoG24
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RT @lcolladotor: You might know someone but you will definitely come across people whom you do not know that are somehow connected to you….
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RT @_Rory_Johnson_: 👀👇☀️Dear Colleagues, there are 2 weeks left to submit an abstract at our October conference #ncRNA2024! Why come? .-Bri….
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The latest human GENCODE releases for Human (45) and Mouse (M34), have just been released. They're available via and visible in @ensembl genome browser as part of Ensembl 111
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New multi-institute £5.5million @wellcometrust funded PARADIGM project to improve diagnosis in rare disease. It will couple functional genomics data with clinical and bioinformatics expertise to empower diagnosis and discovery in genomic medicine
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RT @ensembl: Are you attending #ASHG23? Join our interactive lunch-time workshop to learn all about #Ensembl Variation data and @GencodeGen….
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RT @StevenSalzberg1: Our paper is out in @nature! This is from a @cshlbanbury meeting where a group of scientists got together to ask, can….
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