Genomics Data Science - SFI CRT
@GenomicsCRT
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The SFI Centre for Research Training in Genomics Data Science is a PhD training programme based in 6 Irish Universities which will train 100 PhD students
Ireland
Joined April 2019
🙌 The 1+Million Genomes (1+MG) Initiative is shaping the future of #PersonalisedMedicine in Europe. 📹 In this interview, Gianpiero Cavalleri, the @GDI_Ireland lead, explains how the #1MGenomes Initiative is being implemented in Ireland 👉 https://t.co/B1h1XK4Opt
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Great work @cosmint_ 👏
Finally, thanks to @Researchirel @GenomicsCRT @MSCActions for funding this work! And thanks to @ucddublin @UCDMedicine @sysbioire for the support offered. 17/17
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Huge congratulations to Catherine Higgins who passed her PhD viva today👏👏👏. Catherine is the 1st of our Cohort 3 students to pass her viva so well done to her! She did her PhD @ucddublin with supervisor Michelle Carey studying dynamic gene regulatory networks.
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Well done to Harrison Anthony who presented his research on microsatellite instability in cancers at the European Association for Cancer Research annual conference in Lisbon this week👏
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Well done Roofiya!
👏👩💼Well done to PhD Student Roofiya Koya, presenting her work at the annual GEL (@GenomicsEngland) summit in London today! #GERS2025 #GenomicsSummit2025
@GenomicsCRT @UCD_Research @UCDSBES
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Fantastic talk by PhD student @SophiieMatthews at the @Researchirel forum today 👏👏👏. Sophie investigates how gene copy number can influence cancer susceptibility in humans and across mammalian species @uniofgalway. The only PhD student to present today and she did us proud!
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Huge CONGRATS to @JillOSullivan7 who has passed her PhD viva 👏👏👏 Jill's research focused on Machine Learning techniques for advancing human microbiome research and she did her PhD @UCC under the supervision of Marcus Claesson. We wish Jill all the best for a fantastic career!
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As part of a Gen AI course CRT students Karen Vázquez and Jacopo Verga developed an agentic architecture to explore microRNA databases, perform literature searches, and visualize data. For tool/details see https://t.co/skVeOg1B7X
https://t.co/89tK4vLHmp
https://t.co/TqZLEDD8eX
kaggle.com
Explore and run machine learning code with Kaggle Notebooks | Using data from multiple data sources
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Strengthen your #bioinformatics, #microbiology, and public health knowledge at #ABPHM25! Register for an in-person place by 29 April⏰ Experts will showcase how the latest bioinformatics tools are being used to raise global #PublicHealth standards. 📎 https://t.co/rTL1prI6Qq
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BIG Congrats to CRT student Louise Ryan on passing her viva recently👏👏👏 Louise worked on "A Comparative Genomics Approach to Understanding Sensory Adaptation in Mammalian Evolution" @ucddublin under the supervision of Graham Hughes. Well done Dr Ryan! @louise_ryan_
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Great to see our CRT students @uniofgalway presenting posters and talks at the @UniGalwayMaths Research Day. Well done to @chopraamhk and @SophiieMatthews won won prizes for oral and poster presentations👏
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Our new #integrative #genomics work on human #tuberculosis is now available as a preprint! Check it out below 👇 - all feedback welcome. Support from @Researchirel @GenomicsCRT @ucdagfood @UCD_Conway @animal_eth @QGG_AU
biorxiv.org
Understanding the functional impact of genomic sequence variants is critical for evaluating the role of genetic variation in the host response during tuberculosis (TB) disease and anti-TB treatment...
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Congratulations to Elle Loughran who passed her viva yesterday👏👏👏 Elle did her PhD under the supervision of Prof Aoife McLysaght @aoifemcl @tcddublin and worked on "Polyploidy and cancer: an evolutionary insight to understand cancer genomes". Well done Elle!
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Congratulations Dr Sai @Metagymomics Well done and well deserved 👏👏👏Great to see another one of our cohort 2 students @UCC completing their PhD😀 Wishing you all the best for a fantastic career ahead!
Big congratulations to @Metagymomics on the successful defence of his PhD thesis today. Thanks ever so much to examiners @SarahLebeer and Hilary Browne & chair Frank Peters. Well done also to fellow proud supervisors @sligomicrobe @calumari_walsh and @VanSinderenLab
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CONGRATS to our @tcddublin students Madeleine Murray and @yuanshuo_li who passed their viva's recently! Madeline worked on "Decoding the past: Genomics and the Histories of the Classic Maya civilization" while Li' worked on "The evolution of tissue specific expression" 👏👏👏
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Great work Sai- well done👏👏👏
Excited to share that one of my PhD thesis chapters has now been published! In this study, we explored strain-level variation among vaginal Lactobacillus using shotgun metagenomics, focusing on colonisation and host-microbe interactions.
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CRT students taking a lunchtime walk in beautiful Westport after an intense morning of work at the CRT writing retreat. Great progress being made on getting those chapters written👍
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CRT Co-Directors have been instrumental in Ireland's participation in the newly launched Genome of Europe (GoE) project 👏 Gianpiero Cavalleri @RCSI_Irl is leading the Genome of Ireland project and Eva Szegezdi @uniofgalway is a co-PI 👏👏👏
hrb.ie
Ireland is joining a European project mapping 100,000 genomes drawn from citizens across Europe with 1,200 people across the four provinces of Ireland
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Congratulations Anjan 👏👏👏Fantastic to see another one of our Cohort 2 students passing their viva and we hope you have an exciting and fulfilling career ahead of you. Congrats also @colmr for his excellent supervision
Happy to share that I successfully defended my PhD thesis last Friday! Many thanks to my supervisor @colmr for the support and guidance, and to the examiners @pedrobeltrao, @denshields, and @dimhatzo for a great discussion.
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Warmest Christmas wishes to our students, supervisors, partners, and supporters 🎄🎅 Hope you have a lovely and relaxing Christmas break and a happy and successful 2025!
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