Ram Bhaskara
@RamBhaskara4
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Researcher/ Team leader in Computational Biology & Biophysics, Heartfulness Trainer.
Frankfurt am Main
Joined June 2019
RT @CG_Martini: GoGoGoGoGoGoGoMartini3 now finally published!
nature.com
Nature Communications - This work presents GōMartini 3, an improved coarse-grained protein model combining physics- and structure-based approaches. It boosts computational efficiency and...
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RT @ArindamPhysics: All scientists must condemn what happed in Kashmir. It is a plan to divide, and create instability, which will not succ….
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RT @CG_Martini: MartiniGlass: a Tool for Enabling Visualization of Coarse-Grained Martini Topologies | Journal of Chemical Information and….
pubs.acs.org
As molecular modeling gains ever more prominence in understanding cellular processes, high quality visualization of models and dynamics has never been more important. Naturally, much molecular...
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RT @CG_Martini: Martini 3 - IDP is out! Improved parameters for disordered proteins, great work from Liguo Wang:
nature.com
Nature Communications - Here, the authors introduce Martini3-IDP, a refined model for disordered proteins that addresses prior over-compact structures. Validated across diverse systems, it captures...
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Just dropped on bioRxiv! Our team has assembled a data-driven map of the human E3 ligome. Check out our preprint! #E3_ligome #ubiquitination #dataIntegration #metriclearning .
biorxiv.org
E3 ubiquitin ligases are key regulators of protein homeostasis, targeting specific proteins for degradation via the ubiquitin-proteasome system (UPS). They provide crucial substrate specificity,...
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RT @SmartBiology3D: Students often get lost in complex frameworks of biology. Our animated lessons simplify concepts, saving time and clear….
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Finally our manuscript is out! Thanks to everyone who put hands on this. Congrats to all. If you like ER and muscle take a look at the article!.
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Find out how the switching between receptor isoforms governs ER morphology changes during Myogenesis. Great collaboration with @grumati, and thanks to @sfb1177
embopress.org
imageimageDuring myogenesis, myoblasts fuse to form a syncytium, requiring the fusion of cellular organelles. This study demonstrates that ER-phagy, and the fine-tuning of its receptor FAM134B, play...
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RT @keenanisalive: We often think of an "equilibrium" as something standing still, like a scale in perfect balance. But many equilibria ar….
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RT @CovinoLab: Check out how we used simulations and single molecule FRET to determine how a invasion bacterial protein activates a plasma….
nature.com
Nature Communications - The hepatocyte growth factor receptor MET is a receptor tyrosine kinase involved in cellular processes such as proliferation, migration, and survival. Here the authors...
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RT @alejo_fractal: I’m thrilled to share that my latest research paper has been published in PNAS! 📄 A big thank y….
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Congratulations to all co-authors. Amazing effort connecting molecular interactions to tumor immune surveillance.
Excited to share our latest research on the role of the #autophagy-lysosome system in tumour progression! We identified #IRGQ as a key regulator of MHC-I QC and potential target for cancer therapy #cancer #immunotherapy @FCI_health @EnableFrankfurt
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🚨Checkout our new publication from @IBC2_GU @goetheuni to learn how IDRs amplify membrane remodeling during ER-phagy. Dive into our findings here: @EnableFrankfurt @sfb1177 🔬 @SCALE_Uni_FFM @HummerLab @DikicLab
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RT @AndersSL: Really happy that our paper on solving the crystallographic phase problem using neural networks is out in @ScienceMagazine. T….
science.org
X-ray crystallography provides a distinctive view on the three-dimensional structure of crystals. To reconstruct the electron density map, the complex structure factors F=Fexpiϕ of a sufficiently...
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An incredible talk by Anand Srivastava @mbuanand followed by a nice dinner with colleagues in Frankfurt. Anand’s insights on PH domain-membrane binding is truly inspiring and left us all motivated! Thabks to @IBC2_GU @EnableFrankfurt and @sfb1177.
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RT @AnjaBremm: Our @J_Cell_Sci at a glance on mammalian pexophagy is online now. Huge thank you to my PhD student Justyna Bajdzienko @sfb11….
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RT @SergioCruzLeon1: We are excited to announce the publication of high confidence 3D template matching for #cryoET.@HummerLab @Beck_Labora….
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RT @CG_Martini: Fresh online: an extensive tutorial chapter on how to build and simulate complex membranes with Martini 3. Many examples, f….
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