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@PopoMicro

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Bacterial transposons; Tn7-like elements; CRISPR; 🇹🇼

Joined June 2018
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@PopoMicro
popo
3 months
With ~1/3 of Streptomyces genomes carrying telomeric transposons, these elements compete for the same niche. Identical transposons in different telomeres, both within and between genomes, are occasionally found to be disrupted by other transposons, indicating fierce competition.
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@PopoMicro
popo
3 months
TnsBC telomeric transposons are highly diverse, with distinct gene repertoires. Surprisingly, one subgroup includes the Type I-E Cascade + tnsBC system. The tnsBC was initially thought to replace Cas1-Cas2. Spacer analysis supports their telomeric role, often targeting ttrA.
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@PopoMicro
popo
3 months
Tn7-like telomeric transposons encode TnsA, which mediates cointegrate resolution. We hypothesized TnsA is inactive, as cut-and-paste transposition would harm one-ended transposons. Active site analysis confirmed that conserved residues in non-telomeric transposons are altered.
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@PopoMicro
popo
3 months
Following PASTs, we searched telomeric transposons by clustering and mapping the locations and orientations of DDE family transposases in Streptomyces. This analysis identified two groups of telomeric transposons: Tn7-like and the other containing only conserved tnsB and tnsC.
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@PopoMicro
popo
3 months
Initially mistaken as "broken" V-K CASTs near contig ends, PASTs are linked to a small protein gene and a downstream protelomerase (TelT). We confirmed these contig ends as true termini maintained by TelT. The transposon preferentially targets linearized E. coli chromosome ends.
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@PopoMicro
popo
3 months
These elements, with a single transposon end and a telomere-defined opposite end, act as mobile telomeres. Their lifestyle ensures host dependence and may facilitate conjugative transfer via TtrA-mediated telomere mobilization in Streptomyces, contributing to telomere turnover.
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@PopoMicro
popo
3 months
In eukaryotes, some transposons target telomeres; in Drosophila, they even replace them. Peters lab and Barabas group show that bacteria with linear genomes also harbor diverse telomeric transposons. @JoePetersLab @BarabasGroup.
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@PopoMicro
popo
8 months
RT @JoePetersLab: Eukaryotes have linear DNA and their telomeres are hotspots for transposons. Many bacteria are also known to have linear….
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@PopoMicro
popo
1 year
RT @shen_yao10: Excited to share our recent findings on Tn7 and its fascinating targeting mechanism, now published in Molecular Cell! 🧬🔬Che….
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@PopoMicro
popo
1 year
RT @JoePetersLab: Disclaimer: Photo was digitally edited to include @PopoMicro and @MachadoChacon who couldn't make the photo shot https://….
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@PopoMicro
popo
1 year
RT @JoePetersLab: It was a pleasure working with @PopoMicro on this review of CRISPR-Cas associated transposons (CAST). Hopefully it gives….
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@PopoMicro
popo
2 years
Hats off to the brilliant minds at Feng lab and Gootenberg lab for their awe-inspiring research achievement!.(What a competitive field, people always have manuscripts ready at about the same time).
@zhangf
Feng Zhang
2 years
Since the discovery of CRISPR-Cas systems, people have wondered if a similar type of system exists in eukaryotes. Today, we report in @Nature the characterization of Fanzor, a eukaryotic RNA-guided system that can be reprogrammed for human genome editing.
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@PopoMicro
popo
3 years
@JoePetersLab We thank Dr. Pietrasiak for providing the strain used in this work from the Terrestrial Cyanobacterial Culture Collection (NuMex TCCC). The frozen cell mass sent by Dr. Pietrasiak was even alive! Tough dessert cyanobacteria! @DrylandAlgae
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@PopoMicro
popo
3 years
Our small discovery just got published 😇. Relatively few cyanobacterial genomes are home to most known families of CRISPR-Cas transposons (CAST). After a careful search, we found a new capture: type I-D CAST~.@JoePetersLab
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@PopoMicro
popo
3 years
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@PopoMicro
popo
3 years
PI is bullied!
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@PopoMicro
popo
3 years
Peters lab having fun with snow ~~
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@PopoMicro
popo
3 years
CRISPR 2022~.Popo happy~.
@shsternberg
Sam Sternberg
3 years
CRISPR 2022 conference was a blast, with lots of exciting new transposon biology! Fitting, to come just before #TransposonDay2022. We didn’t catch everyone for the pic but some key players ⁦@JoePetersLab⁩ ⁦@kellogg_liz⁩ ⁦@fthoffmann⁩ ⁦@MikePetassi⁩ …
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