Hugo Kleikamp
@HugoKleikamp
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PostDoc in environmental bioinformatics @Aalborg University
Joined January 2018
RT @MarkvLoosdrecht: The NovoLign pipeline is made publicly available by @HugoKleikamp with the support of @SIAMmicrobes @TNWTUDelft .https….
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RT @EnvSciTech: A research team led by @HugoKleikamp presents proteomics data which establishes #selenocysteine as a dynamic response in hy….
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RT @MetaP_Init: Exciting news🎉#Registration and #abstractsubmission 📝to the 𝟱𝘁𝗵 𝗜𝗠𝗦 are now OPEN. Join us in Avignon 📅April 25-27, 2023 for….
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Tabulating Brenda enzymes (for cofactor search). General purpose proteomic database prepper, adding, decoy equating IL etc. And lastly, how to make a functional database for Uniprot entries:.
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Prepping GTDB 16S sequences for QIIME and EMU:. Parsing NCBI taxdump to rank-normalized taxonomies:. Parsing KEGG orthologies and Modules.
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The bioinformatics work I did last year yielded some some general purpose scripts, which I'd like to bring attention to:. Prepping GTDB protein files for DIAMOND alignment:.
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RT @MarkvLoosdrecht: PhD defence by @HugoKleikamp first nice online discussion with @marc_strous on root-causes of biases .
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RT @MarkvLoosdrecht: Promotie H.B.C. Kleikamp .Benchmarking and developing mass-spectrometry based omics approaches for complex microbiomes….
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RT @MarkvLoosdrecht: A new thesis fit for the spring season. Congratulations to Hugo Kleijkamp,.Looking forward to the defence. @TNWTUDelft….
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RT @SIAMmicrobes: Former SIAM PhD @HugoKleikamp published a comparative metaproteomic study on the complex aerobic granular sludge microbio….
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RT @MarkvLoosdrecht: Our new paper has been Rxived. Detailed analysis of aerobic granular sludge microbiome by @HugoKleikamp and Martin Pab….
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RT @MarkvLoosdrecht: Omicron seems to decouple sewage data and number of infections #Covid #sewage #WBE.No early warning or correlation wi….
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RT @DenisGrouzdev: Congratulations to Martin Pabst and all co-authors on impressive article aimed at studying the unique surface layer of #….
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RT @MarkvLoosdrecht: Database-independent de novo #metaproteomics of complex microbial communities .By Hugo Kleikamp, Martin Pabst and coll….
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RT @NatureBiotech: Database-matching independent metaproteomic analysis of microbes.#NBThighlight.
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RT @jsantoyo: Database-independent de novo metaproteomics of complex microbial communities. @CellSystemsCP.
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Happy to showcase the current effectiveness and speed of de novo peptide sequencing for metaproteomics. github: paper: #NovoBridge #Metaproteomics #denovo #Bioinformatics.
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