Big Data Biology Lab
@BigDataBiology
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Big Data Biology Lab at CMR headed by @luispedrocoelho Our quarterly newsletter: https://t.co/TanfSB0L1b
Brisbane, Queensland
Joined May 2018
Quarterly updates from the Lab!. This June, the focus is on @alex_areiasc , who is working on metabolic modeling of the microbiome with the aim of giving us a new view on microbial composition, focused of "functional roles" instead of taxonomy
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RT @ThePopeLab: Back in 1962 microscopy was used to pen a hypothesis about eukaryote-microbe relationships. ~65 years later we have coupled….
nature.com
Nature Communications - Here, the authors reveal that protozoal communities shape rumen microbiome structure, offering fresh insights into how these complex communities coordinate essential...
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RT @erikgarrison: Postdoc position opening in my group! Research projects: pangenomes for diverse organisms, genome evolution, biocomputing….
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RT @CMR_QUT: Check out our team's paper on SingleM, a metagenomic taxonomy profiler that doesn't ignore unknown species!. .
nature.com
Nature Biotechnology - Novel microbial species in metagenomes are identified using conserved regions within universal marker genes.
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New version of argNorm! Will be available frombioconda & funcscan in the next few days. NCBI genes are now handled in a fundamentally more principled way and this should fix a few corner cases (particularly if data has been run through hARMonization).
pypi.org
Normalize antibiotic resistance genes (ARGs) results by using the ARO ontology (developed by CARD).
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RT @EMBLEvents: 📥 You have only until 24 June to submit your abstract for 'The human microbiome'❗. 🔬💊 Explore cutting-edge breakthroughs in….
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RT @mrillig: Interested in joining our lab in Berlin as a postdoc?. Please consider the Marie-Sklodowska-Curie Postdoctoral Fellowship. De….
marie-sklodowska-curie-actions.ec.europa.eu
The information provided on this page is a summary of the main rules and requirements for Postdoctoral Fellowships (PFs) and who can apply for them.
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RT @cibiocm: Join us at #EESMicrobiome!. Organisers @microbiomix (@uni_copenhagen), Ami Bhatt (@Stanford), Peer Bork (@BorkLab) and @nsegat….
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RT @combine_au: Heads up! The live coding workshop on Genome Quality Evaluation starts next Tuesday, June 10th at 9am with @luispedrocoelho….
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RT @BigDataBiology: Anyone from Europe who wants to spend two years in sunny Queensland working on the global microbiome?. Get in touch (ev….
marie-sklodowska-curie-actions.ec.europa.eu
MSCA Postdoctoral Fellowships enhance the creative and innovative potential of researchers holding a PhD and who wish to acquire new skills through advanced training, international, interdisciplinary...
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Anyone from Europe who wants to spend two years in sunny Queensland working on the global microbiome?. Get in touch (even if all you have right now is a vague idea, just email early)! We also have a lot of friends in Europe for the return phase.
marie-sklodowska-curie-actions.ec.europa.eu
MSCA Postdoctoral Fellowships enhance the creative and innovative potential of researchers holding a PhD and who wish to acquire new skills through advanced training, international, interdisciplinary...
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RT @delafuentelab: Artificial intelligence may be one of the most important tools we have in the global fight against AMR, which now contri….
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RT @svetlana_up: New #MicrobiomeDigest is OUT - Herrgårds cheese / Juan Antonio Rodríguez.- Asian Skin Microbiome….
microbiomedigest.com
See you next week at MVIF! Skin microbiome Large-scale skin metagenomics reveals extensive prevalence, coordination, and functional adaptation of skin microbiome dermotypes across body sites – Che…
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RT @_kruthirao_: Happy birthday 🎂 to our amazing guide @luispedrocoelho ! He’s the heart of the team and we had the sweetest celebration🎉!!….
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RT @SEARCHER_JPIAMR: The argNorm tool to normalize the Output of Metagenomic #AMR analysis by @SEARCHER_JPIAMR’s @svetlana_up, @luispedroco….
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RT @krsahlin: Strobealign v0.16.0 has been released. It comes with both runtime and accuracy improvements. Full changelog here https://t.co….
github.com
Changelog #476: Improve accuracy by enabling (by default) a variant of multi-context seeds: When no regular seeds - which consist of two strobes - can be found for the entire query, strobealign no...
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RT @BigDataBiology: ArgNorm 0.8.0 released!. More information including English language names for outputs and a bugfix for handling abrica….
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If you have used argNorm and ran into any issues or tried it and found it didn't really solve your problem, please reach out! We are very interested in helping users.
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