Cyril Achard
@AChRD4
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Master student in NeuroX at EPFL Maintainer of the cellseg3d plugin for napari
Lausanne, Switzerland
Joined August 2022
#CellSeg3D hits 85K downloads, and weโve updated our preprint to add a few more key details and added new demo videos ๐ฅ! Check out the demos from @AChRD4 and @SebHausmann ๐ฅ https://t.co/bErlPNrB8e
https://t.co/RRSLiPTITF
https://t.co/P12USdgQ9S
biorxiv.org
Understanding the complex three-dimensional structure of cells is crucial across many disciplines in biology and especially in neuroscience. Here, we introduce a novel 3D self-supervised learning...
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๐ new preprint posted of potential interest, lead by talented masters student @AChRD4: ๐ฅfully unsupervised 3D cell segmentation that is as good (or better) than leading supervised methods, with @napari_imaging integration! ๐ https://t.co/ekFfgxcm46 โnew 3D GT dataset โฌ๏ธ๐งต
Have you tried #CellSeg3D yet for automating your 3D lightsheet microscopy analysis? We just hit >75K pip installations! ๐ฅณ We have some ๐ฅ coming soon ... but in the meantime, https://t.co/9MlcU9LM05 lead by @AChRD4 @Neuro_X_EPFL
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๐ฆ๐ฆ๐ฆ #CEBRA is out ๐๐๐ Check out the @Nature paper โฌ๏ธ & the gorgeous code & resources built by current members @stes_io @BenquetCelia @TrackingActions
@EPFL_en @epflSV ๐ how to use: https://t.co/Hihxng6lzh ๐ป install: https://t.co/sQ681FrdZa ๐ https://t.co/GqvIxgWL44
๐ฆ Self-supervised multimodal ML is promising the next AI breakthrough - in our new work published in @Nature, we debut @CEBRAai: for self-supervised hypothesis- and discovery-driven science. ๐ https://t.co/VmrRfy5V9B ๐ป https://t.co/RsnRWqkbGs ๐ฆ https://t.co/zgxSGtOpav ๐งตโฌ๏ธ
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Image cropping is an efficient and yet often underestimated strategy against big-data problems ๐๐ฅ๏ธ๐
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๐๐๐ฟ๐ฅSuperAnimals for #Pose -No human labeling - Video analysis on over 45 species with only 2 global classes of animal pose models -If SA needs fine-tuning, its 10ร more data efficient & 2X outperforms prior transfer learning ๐@shaokaiyeah et al https://t.co/s3RdKKvcrn ๐งตโฌ๏ธ
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Join us in celebrating #ImagingTheFuture Week! If youโre an imaging scientist, share your favorite picture from an imaging project you enjoyed working on๐๐ฝ
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๐ itโs an exciting day! We released the first release candidate for 2.3 ๐ฅ - a whole new GUI awaits you, and we await your feedback! - Welcome to the world, our first full @napari_imaging + PySide2 product! https://t.co/SdRTkH1wBf
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Fantastic day at @CampusBiotech to celebrate our new EPFL Neuro-X institute! Introduction by @MartinVetterli , followed by inspiring talks by J Rogers, T Denison, J Lee, R McIntosh, T Makin, @Jocelyne_Bloch & @gcourtine. @EPFL_en @EPFLEngineering @ICepfl @epflSV
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๐ฅNew #selfsupervised contrastive learning algorithm samples both discrete & continuous time series data, without any data augmentation needed, and leverages aux. variables โ check out #cebra, which outperforms umap, tSNE, & piVAE on synthetic benchmarks.
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Turns out loading models from the hub (or any other place) is โ ๏ธ NOT SAFE โ ๏ธ and opens you up to arbitrary code execution by an attacker๐คฏ Learn how to do it yourself (and how to protect against it) in this video: https://t.co/mbcXbHKMxJ
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So many new labs starting this fall๐โจ #newPI pro tip: whatever time, money, and effort you invest in solid data management pipelines and git controlled code is worth it. When I started 5 years ago (today), it was a priority and itโs so, so worth it. #BetterCodeBetterResearch
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๐ #DLCAIResidencyWeek - @scientistjonas๐ฆ Jonas has been hard at work extending the @napari_imaging-DLC GUI to include multi-cam labeling, & testing how to make robust models with unbalanced data (๐ฆ flying left->right). ๐how he solves it: #DLCBlog ๐ฅ https://t.co/1SYunBI2Lb
deeplabcut.medium.com
Author: Jonas Bengt Carina Hรฅkansson, PhD| University of Colorado, Colorado Springs (UCCS) | Date: 20220831 | Written as part of theโฆ
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๐ #DLCAIResidency - @Nirelkadzo & #teamMegaDLC ๐ฅ The team hooked up ๐MegaDetector+DeepLabCut ๐ and deployed it on ๐ค! ๐ Read about it in the #cookbook: https://t.co/G6cuRvBTRy ๐ And hey, it's live, go test it out! @huggingface App ๐ค: https://t.co/72VCTwaevK
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And, a new release is out too :) including: - layer inf. feature request from @haesleinhuepf โ
- very powerful transformer model for 3D segmentation @vmaxmc2 โ
https://t.co/0ghwZZLdyE
github.com
What's Changed Timer improvement by @C-Achard in #27 Inference on layer by @C-Achard in #26 Adding SwinUNetR by @vidalmaxime in #12 v0.0.1rc4 by @C-Achard in #29 Full Changelog: v0.0.1rc3...v...
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