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Cyril Achard Profile
Cyril Achard

@AChRD4

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Master student in NeuroX at EPFL Maintainer of the cellseg3d plugin for napari

Lausanne, Switzerland
Joined August 2022
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@TrackingActions
Mackenzie Weygandt Mathis, PhD
2 years
๐ŸŽ‰ new preprint posted of potential interest, lead by talented masters student @AChRD4: ๐Ÿ”ฅfully unsupervised 3D cell segmentation that is as good (or better) than leading supervised methods, with @napari_imaging integration! ๐Ÿ‘ https://t.co/ekFfgxcm46 โž•new 3D GT dataset โฌ‡๏ธ๐Ÿงต
@mwmathislab
M. Mathis Laboratory @EPFL
2 years
Have you tried #CellSeg3D yet for automating your 3D lightsheet microscopy analysis? We just hit >75K pip installations! ๐Ÿฅณ We have some ๐Ÿ”ฅ coming soon ... but in the meantime, https://t.co/9MlcU9LM05 lead by @AChRD4 @Neuro_X_EPFL
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@mwmathislab
M. Mathis Laboratory @EPFL
3 years
๐Ÿฆ“๐Ÿฆ“๐Ÿฆ“ #CEBRA is out ๐ŸŽ‰๐ŸŽ‰๐ŸŽ‰ Check out the @Nature paper โฌ‡๏ธ & the gorgeous code & resources built by current members @stes_io @BenquetCelia @TrackingActions @EPFL_en @epflSV ๐Ÿ“š how to use: https://t.co/Hihxng6lzh ๐Ÿ’ป install: https://t.co/sQ681FrdZa ๐Ÿ“– https://t.co/GqvIxgWL44
@TrackingActions
Mackenzie Weygandt Mathis, PhD
3 years
๐Ÿฆ“ Self-supervised multimodal ML is promising the next AI breakthrough - in our new work published in @Nature, we debut @CEBRAai: for self-supervised hypothesis- and discovery-driven science. ๐Ÿ“ https://t.co/VmrRfy5V9B ๐Ÿ’ป https://t.co/RsnRWqkbGs ๐Ÿฆ“ https://t.co/zgxSGtOpav ๐Ÿงตโฌ‡๏ธ
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@haesleinhuepf
Robert Haase
3 years
Image cropping is an efficient and yet often underestimated strategy against big-data problems ๐ŸŒ๐Ÿ–ฅ๏ธ๐Ÿš€
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@TrackingActions
Mackenzie Weygandt Mathis, PhD
3 years
๐Ÿ๐Ÿ˜๐Ÿฟ๐Ÿ”ฅSuperAnimals for #Pose -No human labeling - Video analysis on over 45 species with only 2 global classes of animal pose models -If SA needs fine-tuning, its 10ร— more data efficient & 2X outperforms prior transfer learning ๐Ÿ“@shaokaiyeah et al https://t.co/s3RdKKvcrn ๐Ÿงตโฌ‡๏ธ
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@officialbiohub
biohub
3 years
Join us in celebrating #ImagingTheFuture Week! If youโ€™re an imaging scientist, share your favorite picture from an imaging project you enjoyed working on๐Ÿ‘‡๐Ÿฝ
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@DeepLabCut
DeepLabCut ๐Ÿฆ„
3 years
๐Ÿ‘€ itโ€™s an exciting day! We released the first release candidate for 2.3 ๐Ÿ”ฅ - a whole new GUI awaits you, and we await your feedback! - Welcome to the world, our first full @napari_imaging + PySide2 product! https://t.co/SdRTkH1wBf
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@splacour40
Stephanie P. Lacour
3 years
Fantastic day at @CampusBiotech to celebrate our new EPFL Neuro-X institute! Introduction by @MartinVetterli , followed by inspiring talks by J Rogers, T Denison, J Lee, R McIntosh, T Makin, @Jocelyne_Bloch & @gcourtine. @EPFL_en @EPFLEngineering @ICepfl @epflSV
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@cebraAI
๐Ÿฆ“CEBRA
3 years
๐Ÿ”ฅNew #selfsupervised contrastive learning algorithm samples both discrete & continuous time series data, without any data augmentation needed, and leverages aux. variables โ€” check out #cebra, which outperforms umap, tSNE, & piVAE on synthetic benchmarks.
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@ykilcher
Yannic Kilcher ๐Ÿ‡ธ๐Ÿ‡จ
3 years
Turns out loading models from the hub (or any other place) is โš ๏ธ NOT SAFE โš ๏ธ and opens you up to arbitrary code execution by an attacker๐Ÿคฏ Learn how to do it yourself (and how to protect against it) in this video: https://t.co/mbcXbHKMxJ
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@TrackingActions
Mackenzie Weygandt Mathis, PhD
3 years
So many new labs starting this fall๐Ÿ‘โœจ #newPI pro tip: whatever time, money, and effort you invest in solid data management pipelines and git controlled code is worth it. When I started 5 years ago (today), it was a priority and itโ€™s so, so worth it. #BetterCodeBetterResearch
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@DeepLabCut
DeepLabCut ๐Ÿฆ„
3 years
๐ŸŽ‰ #DLCAIResidencyWeek - @scientistjonas๐Ÿฆ‡ Jonas has been hard at work extending the @napari_imaging-DLC GUI to include multi-cam labeling, & testing how to make robust models with unbalanced data (๐Ÿฆ‡ flying left->right). ๐Ÿ“šhow he solves it: #DLCBlog ๐Ÿ”ฅ https://t.co/1SYunBI2Lb
deeplabcut.medium.com
Author: Jonas Bengt Carina Hรฅkansson, PhD| University of Colorado, Colorado Springs (UCCS) | Date: 20220831 | Written as part of theโ€ฆ
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@DeepLabCut
DeepLabCut ๐Ÿฆ„
3 years
๐ŸŽ‰ #DLCAIResidency - @Nirelkadzo & #teamMegaDLC ๐Ÿ”ฅ The team hooked up ๐Ÿ’šMegaDetector+DeepLabCut ๐Ÿ’œ and deployed it on ๐Ÿค—! ๐Ÿ“š Read about it in the #cookbook: https://t.co/G6cuRvBTRy ๐‚ And hey, it's live, go test it out! @huggingface App ๐Ÿค—: https://t.co/72VCTwaevK
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@TrackingActions
Mackenzie Weygandt Mathis, PhD
3 years
And, a new release is out too :) including: - layer inf. feature request from @haesleinhuepf โœ… - very powerful transformer model for 3D segmentation @vmaxmc2 โœ… https://t.co/0ghwZZLdyE
Tweet card summary image
github.com
What's Changed Timer improvement by @C-Achard in #27 Inference on layer by @C-Achard in #26 Adding SwinUNetR by @vidalmaxime in #12 v0.0.1rc4 by @C-Achard in #29 Full Changelog: v0.0.1rc3...v...
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