Stephen Watts
@stephen_watts
Followers
100
Following
173
Media
0
Statuses
49
Bioinformatician at @UMCCR, PhD with @DrKatHolt
Melbourne, Victoria
Joined December 2008
It has been an absolute privilege to lead this piece of work and collaborate with the fantastic @HartwigMedical team. Many thanks to @fiamh for the endless opportunities and support that have been instrumental in the creation and development of oncoanalyser! @nf_core @nextflowio.
We are happy to announce the release of a new #nf-core workflow -- #oncoanalyser performs an exhaustive analysis of single-patient cancer sequencing data using methods developed by the Hartwig Medical Foundation Australia. (1/6) :thread:.
0
2
10
RT @theycallmemaggi: Alright, it's been 3 years coming (who's counting?) but I can now breathe that sigh of relief that comes with a paper….
0
3
0
RT @sylvainbrisse: Paper describing our online tool for #Klebsiella MALDI-TOF identification is out - great work by @BridelSebastien and co….
0
9
0
RT @theycallmemaggi: It was a mad sprint after a two year marathon with @rrwick @KelWyres and @DrKatHolt, but very pleased to round out 202….
0
23
0
RT @sylvainbrisse: Always dreamt to identify your #Klebsiella strains using MALDI-TOF, but frustrated at lack of reference sprectra in comm….
biorxiv.org
Motivation Klebsiella species are increasingly multidrug resistant pathogens affecting human and animal health and are widely distributed in the environment. Among these, the Klebsiella pneumoniae...
0
18
0
RT @RafalMostowy: What comparative genomics can tell us about the evolution of bacterial capsules and lipopolysaccharides? A short summary….
0
23
0
RT @leland_mcinnes: The first release candidate for UMAP 0.4 is out providing lots of new features, including performance improvements, emb….
0
330
0
RT @KelWyres: Enjoying #ABACBSGIW19 and want to pursue more exciting computational biology? We're looking for a PhD student and a postdoc t….
0
9
0
RT @MicrobioSoc: #OnThisDay in 1995 the genome sequence of Haemophilus influenzae was published. Learn more about H. influenzae and why it….
microbiologysociety.org
In 2017, the World Health Organization (WHO) published the ’12 Priority Pathogens’: a list of twelve microbes that are becoming increasingly resistant to current antimicrobials. These twelve pathog...
0
34
0
RT @serghei_mangul: Very happy to see our study about installability and archival stability of bioinformatics tools is now published in @PL….
0
39
0
RT @jmschreiber91: Just released our preprint on apricot, a Python package implementing submodular selection for machine learning! https://….
github.com
apricot implements submodular optimization for the purpose of selecting subsets of massive data sets to train machine learning models quickly. See the documentation page: https://apricot-select.rea...
0
44
0
RT @wDimD: We found a way to decompress gzip files in parallel. With @RayanChikhi. Code: Paper: .
arxiv.org
Decompressing a file made by the gzip program at an arbitrary location is in principle impossible, due to the nature of the DEFLATE compression algorithm. Consequently, no existing program can...
0
72
0
RT @van__Oijen: Two of the most valuable resources out there on scientific writing:. - @nature's guideline on abstract structure. - Whitesi….
0
630
0
RT @NCBI: NCBI will use ANI analysis to correct existing public records in GenBank. This will ensure that taxonomic information on genome a….
ncbiinsights.ncbi.nlm.nih.gov
To ensure that taxonomic information on genome assemblies is as accurate as possible, NCBI will use average nucleotide identity (ANI) analysis to correct existing public records in GenBank. We will...
0
66
0
RT @biorxiv_bioinfo: Assessing graph-based read mappers against a novel baseline approach highlights strengths and weaknesses of the curren….
0
29
0
RT @s_anders_m: Does your t-SNE lie to you? Find out with Sleepwalk: -- Our new tool shows you what is hidden in yo….
0
153
0