Samuel Abalde
@saabalde
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JSPS postdoctoral fellow at the Atmosphere and Ocean Research Institute, U. of Tokyo. Interested in phylogenomics, transcriptomics and comparative genomics.
Joined December 2017
Finally, the typeset version is out:
academic.oup.com
Abstract. Xenacoelomorpha are mostly microscopic, morphologically simple worms, lacking many structures typical of other bilaterians. Xenacoelomorphs—which
New paper with @ulfjo out today on Systematic Biology: "A Phylogenomic Backbone for Acoelomorpha Inferred from Transcriptomic Data". https://t.co/9s3a8eNQEi
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Friendly reminder: next Monday!
🧬 Simposio MUSEUM BIODIVERSITY GENOMICS 🗓️15/Sept 📍@mncn_csic Ponentes internacionales, genómica aplicada a colecciones naturales y nuevas fronteras en biodiversidad. 🗓 Inscripciones hasta el 1/9 👉 https://t.co/f5PaDscRRN
#Genomics #Biodiversity #CSIC #Museums #Science
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The #MaxPlanckPostdocProgram offers a guaranteed contract of at least 3 years, targeted mentoring, and career workshops. The call for applications is open now! 🚀 Take advantage of this opportunity and browse the job vacancies. https://t.co/yWjsq8ld8A
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🧬 Simposio MUSEUM BIODIVERSITY GENOMICS 🗓️15/Sept 📍@mncn_csic Ponentes internacionales, genómica aplicada a colecciones naturales y nuevas fronteras en biodiversidad. 🗓 Inscripciones hasta el 1/9 👉 https://t.co/f5PaDscRRN
#Genomics #Biodiversity #CSIC #Museums #Science
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Later this month I will visit the Asamushi Research Center for Marine Biology, in Aomori, where I will train undergraduate and graduate students in the use of low-coverage genomic data for studying diversity. I am very excited about this workshop! :-) https://t.co/MRePCRkC9G
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Genomics Sheds New Light on the Ancestral Bilaterian Opsin Repertoire and Suggests Rhabdomeric Phototransduction in Xenacoelomorpha https://t.co/3i6CRlx88O
@GenomeBiolEvol
academic.oup.com
Abstract. Animals use opsins, light-sensing, transmembrane proteins, to detect light, which is then converted into an electrical stimulus in the photorecep
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📑 New PCI Genomics recommendation, by @saabalde
https://t.co/84ytYoD9yq On the work of Ole K. Tørresen et al. (2025) Comparison of whole-genome assemblies of European river lamprey (Lampetra fluviatilis) and brook lamprey (Lampetra planeri)
biorxiv.org
We present haplotype-resolved whole-genome assemblies from one individual European river lamprey ( Lampetra fluviatilis ) and one individual brook lamprey ( Lampetra planeri ), usually regarded as...
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Help us improve the @erga_biodiv Knowledge Hub! A quick questionnaire (1-2 minutes!) will guide us in adding content that better meets your #biodiversity #genomics needs. We really appreciate your feedback! https://t.co/DoKwSZe7l2
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Circatidal control of gene expression in the deep-sea hot vent shrimp Rimicaris leurokolos https://t.co/Wg7b6UZBHB
royalsocietypublishing.org
Abstract. Biological clocks are a ubiquitous feature of all life, enabling the use of natural environmental cycles to track time. Although studies on circa
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RNAseq is commonly performed. We compared N=30 wild-type Bl6 mice to an N=30 heterozygotic knockout with a phenotype, and then downsized. We found you need at least an N= 8-12 to avoid a >50% false positive rate. A 2nd line confirmed the finding. https://t.co/wwKRUcdKmH
biorxiv.org
Determining the appropriate sample size (N) for comparative biological experiments is critical for obtaining reliable results. In order to determine the N, the usual approach is to perform a power...
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New paper with @ulfjo out today on Systematic Biology: "A Phylogenomic Backbone for Acoelomorpha Inferred from Transcriptomic Data". https://t.co/9s3a8eNQEi
academic.oup.com
Abstract. Xenacoelomorpha are mostly microscopic, morphologically simple worms, lacking many structures typical of other bilaterians. Xenacoelomorphs—which
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Job Alert. We have 6-year funded positions for a postdoc and bioinformatician to join our @ERC_Research #BATPROTECT project. Topics include genome assembly, annotation, comparative genomics & transcriptomics and more. Pls RT. https://t.co/bfYjajDPmt
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Finally our probe set targeting Ultraconserved elements (UCEs) in Decapoda (and other Malacostraca) is out! I am so happy to be part this with Jonas Geburzi @sderkarabetian and @ggiribet check our manuscript here and see more info👇 https://t.co/BySz4ryCoz
frontiersin.org
Since its introduction about a decade ago, target enrichment sequencing of ultraconserved elements (UCEs) has proven to be an invaluable tool for studies acr...
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#JobAlert. PhD and Postdoc positions in comparative #genomics. Join our #ERC synergy project #BATPROTECT to uncover the mechanisms behind bats' long healthspan & disease resistance. More info https://t.co/OdzEmrd8kn *Please RT.* #ResearchOpportunity #ScienceJobs @LOEWE_TBG
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🚨 Postdoc position 🚨 Excited to be recruiting a postdoc to use sedimentary #ancientDNA 🧬 to better understand climate-associated impacts on an Arctic coastal ecosystem Deadline: 15th June 2024 Based at @CpgSthlm & @Stockholm_Uni Come join us! 😀 https://t.co/Vq9gsKZ6XN
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The 20th edition of the Phylogenomics and Population Genomics course (UB, Barcelona), will take place from July 1 to 12, 2024. Pre-enrolment deadline March 15th, 2024. More info in: https://t.co/F1FMZz8EzQ
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Interested in biodiversity, evolutionary ecology, and subaquatic caves? A 4 years PhD to investigate anchialine caves in Baleares is opened. PI's María Capa and @poliquetdani, together w/ Diego Fontaneto, Joan Pons, Damià Jaume, and @anariesgogil PM us for info @MEG_Verbania
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Another foray into understudied arthropod groups - Ernesto Recuero and I just published a preliminary look at diversity of Pseudoscorpions from the higher peaks of southern Appalachia: https://t.co/qiB8er95CE Unsurprisingly, there's more than meets the eye!
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