OpenVax
@OpenVax
Followers
261
Following
107
Media
2
Statuses
37
Open source software for algorithmic vaccine design and personalized cancer vaccines
New York, NY
Joined January 2018
I wrote up a quick tutorial on getting started with the @OpenVax cancer neoantigen vaccine pipeline:
openvax.org
We've previously written about the OpenVax neoantigen prediction pipeline, which is the computational basis of 3 clinical trials at Mount Sinai. The purpose of this post is to prov
0
14
30
What's your favorite place to send your sequencing libraries to get sequenced?
1
2
1
MHCflurry 2.0 released (MHC binding and antigen processing predictor), see thread below for the associated paper
Our paper on MHC I ligand prediction is out today at Cell Systems! Some background and summary below. 1/ https://t.co/uoZ9rsEu9B
0
0
2
We are hiring! Interested in cutting edge computational research at the intersection of cancer, immunology and evolutionary dynamics? If so please apply: https://t.co/hmIQMfPVvo
@IcahnMountSinai
0
7
11
Very excited about our new Center for Computational Immunology at the Tisch Cancer Institute to help to bring together some great researchers on this important topic!!! @SinaiImmunol @IcahnMountSinai @TischCancer
https://t.co/PCliYPheF8
3
6
29
Beautiful talk by @MiriamMerad! @AACR describing phenotypic and functional diversity across DC subsets within the TME
0
6
36
Very proud of grad student, Dan Fu Ruan @df_ruan1 for stellar job in presenting effects of HLA-E expression as a major determinant of antitumor function at @KeystoneSymp . Thanks very much for the opportunity to present @Dr_Nick_Bikes @EricVivier1 #CarolineRobert an #LewisLanier!
0
5
32
Ana Blazquez-Gonzalez from #BhardwajLab describes the Phase I clinical study she coordinates to evaluate a multi-peptide personalized neoantigen cancer vaccine. #PriismWIP
1
3
6
Big congratulations to @DrJohnSfakianos #BhardwajLab @AmirHorowitz @MattGalsky @adam_farkas1 for being awarded @DeptofDefense funding to study the role of #NK cells in #bladdercancer. Exciting days ahead for more translational science at MSSM!
0
3
12
John Grout, phD student from Merad/Salmon lab performs #singlecell sequencing, #cytof and multiplex immunohistochemistry to characterize the stromal cell compartment of early stage #lung cancer. #PriismWIP
1
1
9
We have an opening for a new faculty member in Cancer Computational Immunology at OHSU. Fantastic opportunity for high impact work, great colleagues, great place to build a career. Please retweet and DM/email me if you have any questions. https://t.co/nxnSBwrS9e
2
30
26
Wow what an inspirational story! https://t.co/WwAAZkzm8R
0
1
3
Happy New Year 2019! May your data be replicable, your grants funded, your applications approved and our scientific knowledge improved! #2019
0
5
12
Spotlight: (Original article appears in @eLife
https://t.co/dYz9Neaem9)
@rongejman @A_YChang @WeillCornell @sloan_kettering #MHC #neoantigen
0
2
2
Presenting on clinical genomics & cancer immunotherapy in kidney cancer at @sitcancer #SITC18 right now. Not here or want to follow along online? Here’s my presentation! <1/n>
15
48
173
@IcahnInstitute & @OpenVax looking for candidates to work on bioinformatics for personalized cancer vaccines. Any convex combination of {bio, compsci} background welcome. Send me your resume (alex@openvax.org)
1
1
2
We just published our work on defining a standard file format for annotated antibody and TCR sequences, with current or planned support from many of your favorite tools. Check it out! #airr cc @bcr_tcr
frontiersin.org
Increased interest in the immune system's involvement in pathophysiological phenomena coupled to decreased DNA sequencing costs have led to an explosion of a...
2
6
15