Open-ST
@open_sts
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Open-Source Spatial Transcriptomics developed in the @N_Rajewsky lab, @MDC_Berlin
Berlin
Joined October 2023
🤝 Join the Open-ST community!. • Use our example data to test the pipeline.• Check our troubleshooting guide.• Share your experience.• Get support from other users. Open science in action! 🌟.
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💡 The protocol includes:. • Detailed experimental procedures.• Complete computational pipeline.• Quality control guidelines.• Example datasets to test your setup.• Interactive 3D visualization. 🔗 All resources available at:
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📋 Our @STARProtocols covers everything you need:. 🧪 Converting flow cells into capture areas.🔬 Library preparation.💻 Data processing & analysis.🎯 Troubleshooting tips. All steps are documented with videos & example data!.
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🧬 Want to implement Open-ST in your lab?. We've published a detailed guide that takes you from tissue sections to 3D molecular maps.
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RT @CellCellPress: In the latest issue! Open-ST: High-resolution spatial transcriptomics in 3D
cell.com
Open-ST is an end-to-end experimental and computational workflow for do-it-yourself subcellular spatial transcriptomics in 2D or 3D at low cost.
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RT @MDC_Berlin: The @N_Rajewsky lab at the #mdcBerlin has developed a spatial transcriptomics platform to reconstruct tissues in #3D with s….
mdc-berlin.de
An open-source platform developed by researchers in Nikolaus Rajewsky’s lab at the Max Delbrück Center creates molecular maps from patient tissue samples with subcellular precision, enabling detailed...
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RT @N_Rajewsky: i am so excited about our open source inexpensive, sub-cellular capture, do-it-yourself Open-ST that transforms tissues int….
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RT @nu_karaiskos: And it's out 🎉. Check out our updated paper & tweetorial on Open-ST, our DIY spatial transcriptomics method. Many, many….
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RT @danilexn: Our #OpenST paper is now online @CellCellPress!. Very cool updates ahead🧵⬇️. @L_Marie_Schott @_Elena….
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