The Nirmal Lab
@nirmallab
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Decipher regulatory circuits of cancer through multi-omic data integration. 🏢@harvardmed 🏥@brighamwomens - Account managed by Lab Members & PI.
Boston, MA
Joined March 2023
🔬 Join our Harvard BWH lab! We’re hiring a Senior Research Tech with:. - Strong wet lab skills 🧬.- Expertise in immunofluorescence imaging 🔬.- Bonus: scRNA-seq & CRISPR experience 🔍. Know someone or interested? Please send your CV to nirmallab@bwh.harvard.edu. Please share!!.
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Here is a series of tutorials using SCIMAP 🎉 Perfect for those venturing into spatial biology or working with CODEX, MxIF, CyCIF, mIHC, MIBI, IMC, and related data types 🧬. We hope, it contributes to your work!
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I highly recommend JOSS to anyone looking to publish software tools without any drama (compare to every other tool that doesn’t work)! The entire peer-review process was open, interactive, and a seamless experience, all via GitHub! 🚀💻 Highly recommend it! #OpenSource #JOSS.
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🧵 Excited to share our recent publication: SCIMAP: A Python Toolkit for Integrated Spatial Analysis of Multiplexed Imaging Data! 📊🧬 SCIMAP has been pivotal in our lab for analyzing multiplexed imaging spatial data, enabling several high-impact studies.
joss.theoj.org
Nirmal et al., (2024). SCIMAP: A Python Toolkit for Integrated Spatial Analysis of Multiplexed Imaging Data. Journal of Open Source Software, 9(97), 6604, https://doi.org/10.21105/joss.06604
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A "poor man's version" of viewing 3D data generated by Alex Wong and Clarence Yapp 🔬🎥 Welcoming donations of Apple Vision Pro 😉👓
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RT @ajitjohnson_n: I am excited to share that I will be presenting at the Festival of Genomics & Biodata in Boston (June 12-13). Let's chat….
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🌟 Excited to learn that we have received the "Team Science" award from @MelanomaReAlli with @dliu_ccb, @rhaq1, and Dr. Steve Hodi! 🎉 Looking forward to some exciting work in the space of immuno-oncology. 🔬💡.
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🚀 We've just OPEN-SOURCED a series of tutorials (over 15) on multiplex image analysis 🎉 Perfect for those venturing into spatial biology or working with CODEX, MxIF, CyCIF, mIHC, MIBI, IMC, and related data types 🧬. We hope, it contributes to your work!
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🌟 Excellent presentation by our lab member, Sara Filler, on our ongoing research into the precancerous stages of melanoma. 🔬🧬. #Melanoma #SpatialBiology
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We're on the lookout for a passionate and innovative computational Postdoctoral Fellow to join our team! Please spread the word!. 🔬 Cutting-edge projects .📷 Collaborative environment.
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RT @ajitjohnson_n: Exited to be the beautiful NCI campus to discuss and define pre-cancer! Looking forward to sharing our work on melanoma….
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RT @AkoyaBio: Wondering how #spatial context matters in complex #biology? . Register for this @FLGenomics webinar to hear researchers discu….
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Dr. Nirmal will be sharing about the tumor microenvironment evolution in early melanoma today.
How can #spatial technologies help identify and validate biomarkers to advance #drugdiscovery? Find out more in today’s Spatial Omics ONLINE webinar at 3pm BST/ 10am EST. Join us live or get on-demand access by signing up here:
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Our work highlighted alongside a bunch of other amazing manuscripts in the special collections of high-caliber cancer research (Tumor Microenvironment l) that was recently published in AACR journals. Thank you @CD_AACR !.
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This is amazing.
HHMI is implementing a new salary scale for HHMI-employed postdoctoral researchers, effective April 9, 2023. (1/4).
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RT @CTSCB_HK: New! @CTSCB_HK Stem Cell Seminar Series by Dr. @ajitjohnson_n @harvardmed @nirmallab . "The Spatial Landscape of Progression….
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We are looking for a Research Assistant to work on cutting-edge spatial omics data & tumor microenvironment. Join our collaborative & inclusive team. Apply Now: #spatialbiology #singlecell
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Exciting news 📢 The Nirmal Lab at @Harvard University is hiring a postdoc to work on cutting-edge spatial omics data & tumor microenvironment. Join our collaborative & inclusive team. RA job ad coming out in a few days! #postdocjobs #spatialbiology
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