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Matthias Klumpp | @matk@mastodon.social Profile
Matthias Klumpp | @[email protected]

@matxpp

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PhD Student in Neuroscience by day, free software developer by night. Debian Developer, KDE and GNOME member. @mklu.bsky.social on Bluesky. Opinions are my own.

Heidelberg, DE
Joined February 2011
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@michael__ni
Michael Niedermayer
9 months
FFv1 v4 will add support for IEEE-754 single- and half-precision RGB/RGBA/Grayscale floating point pixel formats. The work designing and implementing that was funded by the Sovereign Tech Fund. Support will be available in FFmpeg 8.0 with -strict experimental.
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@luckytran
Dr. Lucky Tran
11 months
The NIH announced it will slash billions of dollars of support to universities and research centers. This is one of the biggest attacks on science we have ever seen. It could dismantle the biomedical research system, shut down clinical trials, and halt development of treatments.
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@_AlexHirsch
Alex Hirsch
11 months
@spectatorindex Oh dear, Plagiarism-Bot has been plagiarized. Who ever could have seen this coming
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@matxpp
Matthias Klumpp | @[email protected]
11 months
The code of Syntalos is licensed under the LGPL-3.0+ license (libraries), and GPL-3.0+ (main application) you can find it on GitHub: https://t.co/wK3mbilMYg We are excited for your feedback and the cool research people will realize with the software! 9/9
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github.com
Synchronized data acquisition from diverse sources and flexible control for behavior experiments - syntalos/syntalos
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@matxpp
Matthias Klumpp | @[email protected]
11 months
I also want to thank the great projects we depend on, like @kdecommunity, @FFmpeg, Eclipse #Iceoryx, OpenCV, @micropython and so many more! Kudos to hardware vendors with open libraries for their devices, and especially efforts like @MiniscopeTeam and @OpenEphys! You rock! 8/9
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@matxpp
Matthias Klumpp | @[email protected]
11 months
Last, but absolutely not least, I want to thank everyone who collaborated on the publication and helped get it over the finish line, especially the group of Alex Groh. This was a team effort and I am so proud of the result we achieved! 7/x9
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@matxpp
Matthias Klumpp | @[email protected]
11 months
No time to read the paper? Syntalos is also thoroughly documented and some short video tutorials are available to get you started with using the software! It is also already in use by many labs. Check out our website at https://t.co/u034WouvIC! 6/9
syntalos.org
Syntalos is a software for timestamp-synchronized parallel data acquisition from diverse data sources, such as cameras, microendoscopes, Intan electrophysiology amplifiers or Firmata-based serial...
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@matxpp
Matthias Klumpp | @[email protected]
11 months
You can download the open-access paper from @NatureComms here: https://t.co/AcfgVUKKPF It is written with a focus on the users of the software and contains many example experiments, as well as a thorough validation of the performance claims we make about the software! 5/9
nature.com
Nature Communications - Complex experimental protocols often require multi-modal data acquisition with precisely aligned timing, as well as behaviour-dependent interventions. Here, authors describe...
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@matxpp
Matthias Klumpp | @[email protected]
11 months
Syntalos' multithread-/multiprocess-based design is optimized to reduce latency and improve robustness. The software is #opensource running on the #Linux operating system, allowing insight into every single step of the data acquisition pipeline. 4/9
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@matxpp
Matthias Klumpp | @[email protected]
11 months
In addition to that, its module-based intuitive UI to design DAQ schemes and integration of native #Python allows it to be extended easily for a wide array of data-acquisition and closed-loop intervention tasks. For many experiments, no programming skills are needed at all! 3/9
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@matxpp
Matthias Klumpp | @[email protected]
11 months
Many devices used in #biosciences do not allow hardware-level time synchronization, while integrating data from multiple sources becomes increasingly important. #Syntalos provides a novel statistics-based algorithm to keep timestamps in sync over long recording times. 2/9
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@matxpp
Matthias Klumpp | @[email protected]
11 months
I am excited to announce our publication of "Syntalos" in @NatureComms: A software to easily and reliably record from multi-modal data sources and design closed-loop interventions, with a focus on (neuro)scientific experiments, all while keeping timestamps synchronized! ๐Ÿงต1/9
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@ScienceYael
Ya'el Courtney, PhD
1 year
I hope reviewer 3 appreciates that I am coming into lab at 3:30am today to get a critical revision experiment time point ๐Ÿ˜ด
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@Nassreddin2002
Nassreddin ๐Ÿ‰ ู†ุตุฑ ุงู„ุฏูŠู†
1 year
German govt collapse explained๐Ÿ‡ฉ๐Ÿ‡ช FDP: *enter govt with SPD/greens* FDP: *sabotage any meaningful economic reforms* FDP: *poll below threshold* FDP: I DEMAND PUBLIC SPENDING CUTS, TAX CUTS AND STOP ON CLIMATE POLICIES SPD/Greens: no FDP: SNAP ELECTIONS? Scholz: you're fired
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@MichaelEMann
Prof Michael E. Mann
1 year
On the bright side, we now have an answer to the Fermi Paradox
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@matxpp
Matthias Klumpp | @[email protected]
1 year
Oh no...
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@matxpp
Matthias Klumpp | @[email protected]
1 year
Release notes here: https://t.co/wwuZz2Lxfh You can also download the release from Flathub:
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flathub.org
Synchronized data acquisition from diverse sources and flexible experiment control
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@matxpp
Matthias Klumpp | @[email protected]
1 year
#Syntalos 2.0 was just released, for better (neuro)scientific data acquisition in behavior experiments! This release contains tons of changes and improved Python APIs, lower latencies and a new IPC system. Check it out at
syntalos.org
Syntalos is a software for timestamp-synchronized parallel data acquisition from diverse data sources, such as cameras, microendoscopes, Intan electrophysiology amplifiers or Firmata-based serial...
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@matxpp
Matthias Klumpp | @[email protected]
1 year
I updated the #Freedesktop specifications website, to build it with some more modern tools - please let me know if you notice any issues! ๐Ÿ™‚ https://t.co/RsNLHw67k9
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@denisejcai
Denise J. Cai, Ph.D.
1 year
My good friend & colleague @DanielBAharoni shares my passion for making Miniscope technology ๐Ÿ”ฌ accessible to all. His featured piece in @_TheTransmitter highlights the need for ongoing support & maintenance of these valuable tools. Read it here ๐Ÿ‘‡ https://t.co/cCGWLfEo6N
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thetransmitter.org
Funding for the development of open-source tools is on the rise, but support for their maintenance and dissemination, both crucial for their meaningful uptake, remains a major challenge.
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