Daehwan Kim
@infphilo
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Michael L. Rosenberg Assistant Professor at UT Southwestern
Dallas, TX
Joined December 2014
A true graph-based genome aligner: HISAT2 and HISAT-Genotype. Align to the genome+12 million SNPs with amazing speed and accuracy, using a graph FM index. This is a technical tour-de-force from @infphilo
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UTSW's inaugural #UHackMed is underway. Learn more about the two-day event hosted by the Lyda Hill Department of #Bioinformatics
u-hackmed.org
U-HACK MED is a biomedical hackathon program hosted at UT Southwestern Medical Center. 2022 focuses on a global virtual journal club, NeuroChats which will culminate in a brain-focused hackathon in...
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Bioinformatics dept. at UT Southwestern is hiring tenure-track faculty. Please apply!
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Our new paper just went up on bioRxiv, describing a comprehensive human gene database that we've been working on for more than 2 years now @elapertea
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Just out on @bioRxiv HISAT-genotype and HISAT2: graph-based alignment to the human genome with millions of SNPs integrated, PLUS a new genotyping platform for HLA typing and more https://t.co/dl6WCR6qzX
@infphilo @BenLangmead
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Wake up people: using outdated scientific software is not OK https://t.co/Jx9GYEVoTJ with comments from @lpachter
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https://t.co/OcBv0a2g5V Kraken 1.0 for #metagenomics analysis just released. Thanks @DerrickEWood and Jennifer Lu!
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A tenure-track faculty position in Cell Biology and Molecular Genetics at the University of Maryland. Great place! https://t.co/fHkN6aEbeC
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Looking for postdocs to join Kim lab https://t.co/oDjWrInhbF working on graph alignment, HISAT3, and other projects.
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Featured this week: HISAT2, for mapping next-generation sequencing reads to human genomes. Like it? Vote it up! https://t.co/laxtuRQDGB
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Welcome to Hopkins Ruibang Luo! Delighted to have another genome assembly expert among our ranks
Now I'm a Postdoctoral Fellow at Johns Hopkins for @StevenSalzberg1 and @mike_schatz
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https://t.co/oQlXi3zyEA See our newly published protocol on how to do RNA-seq analysis with StringTie and HISAT, faster and better than ever
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Our new tuxedo protocol just came out (HISAT-StringTie-Ballgown)!! https://t.co/rGrkoMfd98
@StevenSalzberg1 @elapertea @jtleek
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CLASS v2.1.5 . Fixed small issues, i.e. the wrong predicted transcripts due to rare reads that are than other reads.
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Our latest "Mash: fast genome and metagenome distance estimation using MinHash" now published in @GenomeBiology
genomebiology.biomedcentral.com
Mash extends the MinHash dimensionality-reduction technique to include a pairwise mutation distance and P value significance test, enabling the efficient clustering and search of massive sequence...
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Centrifuge: Rapid and sensitive classification of metagenomic sequences https://t.co/ruFOLXPd3k. All of NCBI NR DB indexed in 69 GB.
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