🦠🔬 Viome uses a technique called Metatranscriptomics that allows us to assess the microbiome that tells us everything that the DNA does (in terms of species and composition), but also tells us about the RNA (the gene expression of the microorganisms).

Exciting day in the lab! Our @nanopore P2 solo has arrived 🎉. Perfect timing as we embark into the world of soil metatranscriptomics 🧬 🌱

Super proud of our PhD students! Both presented their work on hydrothermal vents from the Red Sea - Isabel is using several geochemistry approaches combined with metatranscriptomics, and Sharifa is deciphering the microbial communities and their potencial functionalities. 👏👏

After a solid 10 years of work, our paper in @NewPhyt is out! We dove into the world of fungi using metatranscriptomics to explore how ectomycorrhizal, saprotrophic, and pathogenic guilds play together (or not) in various forest soils across different biomes🍄 #JGI @INRAE_Nancy

New #preprint alert! #Lichen symbiosis is a great conundrum: how can multiple microbes create a large, 3D, and structurally complex organism? To answer this question, we used metagenomics, metatranscriptomics, and a bit of protein structure modeling 🧵1/7 https://t.co/ePnxi1VmYn

The ISME Early Career Scientist Committee is glad to spotlight @michielperneel, PhD student at VIB-Ugent Center PSB & @VLIZnews, and his paper "A case for absolute gene expression estimates in microbiome studies using metatranscriptomics" https://t.co/750k526s6J (1/2)

Plant–microbiome dynamics through spatial metatranscriptomics and network biology https://t.co/1cF4Ys1STt

Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems Auer et al. 📖 https://t.co/R2o3bAGi52

Dr. David Price is investigating the role of lung dysfunction in Long Covid: “We’re sampling bronchoalveolar lavage fluid and transbronchial biopsies… what we plan to do is metagenomics, metatranscriptomics & RNA seq… to get some idea of the pathogenesis of LC at the site of

Spatial metatranscriptomics resolves host–bacteria–fungi interactomes. Nat Biotechnol 42, 1384–1393 (2024). https://t.co/ytnuJzv8ya

Jennifer Pett-Ridge @Jeffinerca, Lawrence Livermore National Laboratory, on how soils work: a modular approach using metatranscriptomics #ISME19

Our study on #lichen #symbiosis is out in @CurrentBiology! How can multiple microbes create a large, 3D, and structurally complex organism? To answer this question, we used #metagenomics, #metatranscriptomics, and a bit of protein structure modeling 🧵1/7

Metatranscriptomics-guided genome-scale metabolic reconstruction reveals the carbon flux and trophic interaction in methanogenic communities https://t.co/zb1QhYRbx9

Today at the @LongtrecEU @MSCActions project meeting, doctoral candidates present their work: alignments, function, sampling, single-cell, annotation, metatranscriptomics, gene networks, alleles, multiomics and pipelines. All with #longreads! Mind-blowing! @PacBio @nanopore

Spatial metatranscriptomics resolves host–bacteria–fungi interactomes https://t.co/kIYGiOVgoj

Defining microbial community functions in chronic human infection with metatranscriptomics @mSystemsJ from @CBIbberson https://t.co/15sbbcrCsg

Registrations are now open for the 6th edition of the course "Metagenomics, Metatranscriptomics, and Mult'Omics for Microbial Community Studies" with the @hutlab in June. Do not miss it out: https://t.co/ODTF6aF0jd

Evaluation of commercial RNA extraction kits for long-read metatranscriptomics in soil

Spatial metatranscriptomics resolves host–bacteria–fungi interactomes