
@darachm@therealworld
@darachm
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same handle at other places sometimes re: yeast genetics, dumb cloning tricks, life in the shell, pipelines, methodz and liberation, šCFUsš colonizing
south bay CA biotech
Joined April 2011
Here's methods for pooled gen of PPI-screening split-tag yeast assay libraries.tldr; is gateway&gibson, then longread+Nextflow(w/ itermae), then select and shortread seq, fitness with FitSeq (fork) - a lotta PPI quants.Also: ~4x your yeast transforms with this one simple trick.
Pooled PPIseq: screening the SARS-CoV-2 and human interface with a scalable multiplexed protein-protein interaction assay platform #biorxiv_sysbio.
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"As our Arab and Muslim neighbors are beaten and silenced, we fear the atmosphere in Germany has become more dangerousāfor Jews and Muslims alikeāthan at any time in the nationās recent history. We condemn these acts committed in our names.".
An open letter Iām proud to have helped write, and which is signed by 120+ Jewish writers, artists, and scholars living in Germany, is now available in English at n+1.
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@gitlab @nextflow @SingularityApp And yall up and cancelled @mbeisen ? Wow. There's never a non-monetizable moment here on .The Platform. .
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Check it if you want a pipeline on @gitlab for doing de novo plasmid assembly of long-read data separated out by barcode. Yeah random-fragmentation works and you don't need to know the barcodes ahead of time (but that probably helps). @nextflow + @SingularityApp.
Arrayed in vivo barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled libraries . #biorxiv_synbio.
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RT @bioRxiv_synbio: Arrayed in vivo barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled librariesā¦.
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RT @skryazhi: Nice to see this out!. This was such an enjoyable collaboration with @_miloj and @s_venkataram. I leā¦.
link.springer.com
Journal of Molecular Evolution - Random DNA barcodes are a versatile tool for tracking cell lineages, with applications ranging from development to cancer to evolution. Here, we review and...
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RT @UpFromTheCracks: anyway back to effective altruism, they are fascist. timnit is right, unwavering and clear eyed in the face of this euā¦.
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RT @phylogenomics: In the end, this argument is a distraction. If you object to some people getting paid more, well, object to that. But doā¦.
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RT @phylogenomics: I mean, why not just go all in with this logic and cut everyone's salary in half? Then you could do much more on the graā¦.
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hey it's gonna be okay, it's okay that you hate change and hate the people building tools to serve the purposes of marginalized communities instead of ads. Disruption of business network sucks. But we take care of us, we're gonna build something better.
autostraddle.com
Trolls on Twitter got you down? Tired of Mark Zuckerberg's Real Name Policy? Looking for a social network not owned by a massive corporation? Mastodon may be your next haunt.
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Which is fine! I'm just happy it's gonna be fine (except for centralized capitalized algo'd clout yall gonna have to give that up at the door, sorry #personalBrand š).
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RT @nadadocta: @futurebird @slime_succubus I donāt really get the OP. Yeah it sucks to start over (if you even have to-we donāt know for suā¦.
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