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@darachm@therealworld Profile
@darachm@therealworld

@darachm

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Following
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same handle at other places sometimes re: yeast genetics, dumb cloning tricks, life in the shell, pipelines, methodz and liberation, šŸ‘CFUsšŸ‘Ž colonizing

south bay CA biotech
Joined April 2011
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@darachm
@darachm@therealworld
1 year
Questions or comments? Please try the discussion options on the preprint so everyone can see it, and/or email me.Email on preep, also ppiseq AT-THE-DOMAIN-OF rhesis SEPARATED-BY-DOT com.
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@darachm
@darachm@therealworld
1 year
What do we find? Expressed in yeast, Nsp4 seems to stick to KDELR* - that could be part of mechanism for replication foci formation via retrograde, ORF7B seems to stick to taste-receptors šŸ¤”, and many more. Not complete screen, but methods ready for non-specialist applications!.
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@darachm
@darachm@therealworld
1 year
Here's methods for pooled gen of PPI-screening split-tag yeast assay libraries.tldr; is gateway&gibson, then longread+Nextflow(w/ itermae), then select and shortread seq, fitness with FitSeq (fork) - a lotta PPI quants.Also: ~4x your yeast transforms with this one simple trick.
@biorxiv_sysbio
bioRxiv SysBio
1 year
Pooled PPIseq: screening the SARS-CoV-2 and human interface with a scalable multiplexed protein-protein interaction assay platform #biorxiv_sysbio.
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@darachm
@darachm@therealworld
2 years
"As our Arab and Muslim neighbors are beaten and silenced, we fear the atmosphere in Germany has become more dangerous—for Jews and Muslims alike—than at any time in the nation’s recent history. We condemn these acts committed in our names.".
@benmauk
Ben Mauk
2 years
An open letter I’m proud to have helped write, and which is signed by 120+ Jewish writers, artists, and scholars living in Germany, is now available in English at n+1.
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@darachm
@darachm@therealworld
2 years
@gitlab @nextflow @SingularityApp And yall up and cancelled @mbeisen ? Wow. There's never a non-monetizable moment here on .The Platform. .
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@darachm
@darachm@therealworld
2 years
Check it if you want a pipeline on @gitlab for doing de novo plasmid assembly of long-read data separated out by barcode. Yeah random-fragmentation works and you don't need to know the barcodes ahead of time (but that probably helps). @nextflow + @SingularityApp.
@bioRxiv_synbio
bioRxiv Synthetic Biology
2 years
Arrayed in vivo barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled libraries . #biorxiv_synbio.
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@darachm
@darachm@therealworld
2 years
RT @bioRxiv_synbio: Arrayed in vivo barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled libraries….
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@darachm
@darachm@therealworld
3 years
RT @mbeisen: ā€œIf the strikers get their way I won’t be able to pay them allā€ is the classic gripe of middle management, exploited by busine….
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@darachm
@darachm@therealworld
3 years
RT @UpFromTheCracks: anyway back to effective altruism, they are fascist. timnit is right, unwavering and clear eyed in the face of this eu….
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@darachm
@darachm@therealworld
3 years
Really glad Needhi is articulating how the research system is structured with tiers of research workers having conflicting interests. PI solidarity with researchers is essential to flex power against unis and agencies (srsly). What are PIs doing that also deserve solidarity?.
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@darachm
@darachm@therealworld
3 years
RT @phylogenomics: In the end, this argument is a distraction. If you object to some people getting paid more, well, object to that. But do….
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@darachm
@darachm@therealworld
3 years
RT @phylogenomics: I mean, why not just go all in with this logic and cut everyone's salary in half? Then you could do much more on the gra….
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@darachm
@darachm@therealworld
3 years
I don't know if exports are working from Twitter anymore, but I used "debirdify" a few days ago to pull put handles. looks similar. It would probably be helpful to pull contacts so you can reconnect. Anyone lemme know if you want help.
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@darachm
@darachm@therealworld
3 years
I don't know if exports are working from Twitter anymore, but I used "debirdify" a few days ago to pull put handles. looks similar. It would probably be helpful to pull contacts so you can reconnect. Anyone lemme know if you want help.
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@darachm
@darachm@therealworld
3 years
hey it's gonna be okay, it's okay that you hate change and hate the people building tools to serve the purposes of marginalized communities instead of ads. Disruption of business network sucks. But we take care of us, we're gonna build something better.
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autostraddle.com
Trolls on Twitter got you down? Tired of Mark Zuckerberg's Real Name Policy? Looking for a social network not owned by a massive corporation? Mastodon may be your next haunt.
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@darachm
@darachm@therealworld
3 years
Which is fine! I'm just happy it's gonna be fine (except for centralized capitalized algo'd clout yall gonna have to give that up at the door, sorry #personalBrand šŸ˜‚).
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@darachm
@darachm@therealworld
3 years
I'm just so excited for people to actually learn about the fediverse, *who's been quietly building it* over the years, and why šŸ„²āœŠāœŒļøšŸ“. Until then, theyll be pulling hot takes out of their butts 🤣🤣🤣.
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@darachm
@darachm@therealworld
3 years
RT @nadadocta: @futurebird @slime_succubus I don’t really get the OP. Yeah it sucks to start over (if you even have to-we don’t know for su….
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