Kazuhiro Horiba
@cikazda
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Researcher in JPN. ← Postdoc at KI and Nagoya Univ. RIEM. Developer of @pathdet. Pediatrician. InfectiousDisease/Phage/Metagenomics/Bioinformatics.
Tokyo
Joined August 2021
We showed that #nanopore sequencing can be used for both #metagenomic and host #transcriptomic analysis from a single clinical sample with #infectious diseases. @OFIDJournal
academic.oup.com
AbstractBackground. Infantile central nervous system infections (CNSIs) can be life-threatening and cause severe sequelae. However, the causative microorga
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mNGS found Prevotella spp. in culture-negative pus samples in muscle abscesses.#metagenome #NGS #pathdet
https://t.co/VxWoffEbFq
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mNGS, using PATHDET pipeline, revealed Fusobacterium arthritis. #ngs #metagenome @pathdet The contribution of metagenomic next-generation sequencing to a diagnosis of gas-producing Fusobacterium-induced septic hip arthritis: A case report https://t.co/VxWoffEbFq
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PATHDET detected GAS in a pleural fluid using metagenomic NGS. Severe Parapneumonic Effusion in a Child With Respiratory Syncytial Virus and Streptococcus pyogenes Coinfection
cureus.com
A four-year-old boy with respiratory syncytial virus (RSV) infection and suspected bacterial coinfection deteriorated despite antibiotic treatment. Intensive care and thoracoscopic debridement w...
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Metagenomic Analysis of Lung Microbiome in Patients With Interstitial Lung Diseases and Sarcoidosis: An Experimental Study - Takeuchi - 2025 - Health Science Reports - Wiley Online Library
onlinelibrary.wiley.com
Background and Aims Interactions between the lung microbiome and pulmonary epithelium plays a pivotal role in shaping immunity in the lung. Idiopathic pulmonary fibrosis (IPF) is the most common...
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Japanese expert gives seminar on metagenomics | Oswaldo Cruz Institute
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A huge thank you to all the team of supporters and collaborators who have stuck with us through part or all of this! @guru_uhuru @cikazda @pathdet Ben Parcell Nick Feasey Nick Leslie Linda Marriott @Amandatron89 @Anamart066 @SepsisUK @ASLM_News @Nsutebu Yoshinori Ito
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New Selenomonas spp. were found in septic patients. Complete genome sequence of Selenomonas species strain TAMA-11512, isolated from blood culture of a septic patient | Microbiology Resource Announcements https://t.co/aa3C9KgJkM
#mra #sepsis #selenomonas #NGS
journals.asm.org
Selenomonas species has the properties of anaerobic, Gram-negative, curved, or crescent-shaped rods with flagella originating from the inner curvature of the cell (1). It has been isolated from the...
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PATHDET's Pathogen Prediction Method receives Japanese Patent, no.7373843.
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We assessed the relationship between gut microbiota and Fontan-associated PLE.
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日本感染症学会と米国感染症学会(IDSA)のコラボレーションに期待しています😄
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So @nanopore discovered something a few days ago - and it has to do with light. And they posted this image (sorry, too good not to share off the community). Yes, that’s 469% increased output. So, we decided to give it a shot and …
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'A regrettable decision, made without any preceding dialogue with the universities and researchers, - says Annika Östman Wernerson, President of Karolinska Institutet, critisizing the Swedish government’s choice to stop all grants for development research https://t.co/0ojhFRVV39
news.ki.se
At its meeting of 22 June, the government made the decision to stop all grants disbursed by the Swedish Research Council itemised as development research, effectively pulling the plug on a great deal...
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Published online! Nanopore sequencing could comprehensively detect RNA viral pathogens in BALF samples with equivalent sensitivity and genome coverage as Illumina sequencing. https://t.co/6ttJWGkUTv
#nanopore #infection #metagenome #respiratory
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We found, #Ureaplasma in the newborn's gastric fluid was connected to their mother's chorioamnionitis in cases of #newborn respiratory distress, according to #NGS. #metagenomics
https://t.co/Hgh68eUH82
tandfonline.com
Respiratory distress is common in neonates admitted to neonatal intensive care units. Additionally, infectious diseases such as intrauterine infections or vertical transmission are important underl...
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Our poster presentation about the #bacteriophage genome analysis pipeline for #phagetherapy is at #ECCMID2023. PHINISH pipeline is developed for screening phage genes unsuitable for clinical use. and available for #nanopore, #Illumina, and hybrid seq data.
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日本臨床微生物学会 一般演題O13−3でナノポアシークエンスによる感染症診断の発表をします。新たな微生物検査法としてのmetagenomic NGSにご興味がある方は是非。#微生物学会34
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Now online! Bacterial droplet-based single-cell RNA-seq reveals antibiotic-associated heterogeneous cellular states
cell.com
BacDrop is a droplet-based technology for single-cell RNA-seq in bacteria that can be scaled to millions of bacterial cells or hundreds of samples and was used to elucidate transcriptionally distinct...
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