PATHDET
@pathdet
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PATHDET is a web application for “PATHogen DETection” from extracellular DNA/RNA via high-throughput sequencing data for infectious diseases. Dev by @cikazda.
RIEM, Nagoya Univ., Japan
Joined January 2020
You can access the PATHDET REPORT (demo). https://t.co/anoW7HN6D3 Demo data is from S. maltophilia bacteremia. #pathdet #demo #infections
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mNGS found Prevotella spp. in culture-negative pus samples in muscle abscesses.#metagenome #NGS #pathdet
https://t.co/VxWoffEbFq
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mNGS, using PATHDET pipeline, revealed Fusobacterium arthritis. #ngs #metagenome @pathdet The contribution of metagenomic next-generation sequencing to a diagnosis of gas-producing Fusobacterium-induced septic hip arthritis: A case report https://t.co/VxWoffEbFq
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PATHDET detected GAS in a pleural fluid using metagenomic NGS. Severe Parapneumonic Effusion in a Child With Respiratory Syncytial Virus and Streptococcus pyogenes Coinfection
cureus.com
A four-year-old boy with respiratory syncytial virus (RSV) infection and suspected bacterial coinfection deteriorated despite antibiotic treatment. Intensive care and thoracoscopic debridement w...
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PATHDET's Pathogen Prediction Method receives Japanese Patent, no.7373843.
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PATHDET web server is still under maintenance, but the analysis is available on our local env.; infectious diseases researchers who need metagenomic NGS analysis are welcome to contact us.
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PATHDET conducted metagenomic analysis in this study.
Published online! Nanopore sequencing could comprehensively detect RNA viral pathogens in BALF samples with equivalent sensitivity and genome coverage as Illumina sequencing. https://t.co/6ttJWGkUTv
#nanopore #infection #metagenome #respiratory
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PATHDET contributed to the detection of #Ureaplasma in this study. #metagenome #newborn #chorioamnionitis
We found, #Ureaplasma in the newborn's gastric fluid was connected to their mother's chorioamnionitis in cases of #newborn respiratory distress, according to #NGS. #metagenomics
https://t.co/Hgh68eUH82
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Is that just me, or Today's poster session @MicroTas2022 was quiet? Anyway, if you want yo chat about any of our posters, please DM! 🙏 Also please admire our colour matching poster selection 🤩 #microtas2022 #microfluidics #LabOnAChip
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Performance of Nanopore and Illumina metagenomic sequencing for pathogen detection and transcriptome analysis in infantile central nervous system infections ✅ Just Accepted 🔓 Open Access 🔗 https://t.co/MF3krEIcCW
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PATHDET pipeline was used for metagenomic analysis for Illumina and Nanopore sequence data. An online version is now undergoing an update.
We showed that #nanopore sequencing can be used for both #metagenomic and host #transcriptomic analysis from a single clinical sample with #infectious diseases. @OFIDJournal
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I'm excited to speak at the free #WSCSpotlight on April 27! I will discuss our @iSEP_SEQ 'microfluidics + sequencing' approach to diagnose sepsis. Join me and 35+ speakers discussing diagnostic approaches for #sepsis. For more info and free registration
wscspotlight.org
Free of charge and entirely virtual on April 27, 2022.
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For server maintenance, PATHDET will not be available on the web to March 25th. If you need immediate analysis, please contact us by e-mail.
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The metagenomic NGS for pediatric febrile neutropenia by PATHDET was published in the OFID Volume 8 Issue 11 November 2021.
academic.oup.com
Metagenomic next-generation sequencing was used to diagnose pathogens in 17% of pediatric patients with febrile neutropenia with negative blood culture tes
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Currently, it may be difficult to connect to PATHDET. If you want an early analysis, please contact us by email. pathdet.message"at" https://t.co/zpwvy6m1qO
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Currently, PATHDET is down due to a server problem. Please wait for a while until it resumes.
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PATHDET is not available during am 9:00 Sep 29th - pm 18:00 on Sep 30th (Japan Standard Time) due to server maintenance.
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The analysis of 112 febrile neutropenic children's blood by PATHDET was reported in the OFID. https://t.co/NHU55MhRWg
#pathogendetection #metagenome
academic.oup.com
Metagenomic next-generation sequencing was used to diagnose pathogens in 17% of pediatric patients with febrile neutropenia with negative blood culture tes
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PATHDET detected GBS meningitis from pediatric sepsis cases.
link.springer.com
BMC Infectious Diseases - Group B Streptococcus (GBS) is an important cause of invasive infection in neonates and infants. Cerebrospinal fluid (CSF) findings and culture may not show evidence of...
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Delighted to learn that the @nanopore MK1C has reached @nimrnigeria for our work in @iSEP_SEQ project with @OAUniversity @pathdet sequencing Circulating microbial cfDNA 💜
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