Charley McCarthy
@cgpmcc
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🇮🇪 research associate at @UniofNottingham / he/him
Nottingham
Joined December 2018
New paper out today in @Micro_MDPI 😃 Draft genomes for Phytophthora chlamydospora, P. gonapodyides and P. pseudosyringae Using bioinf and mass spec, we characterised their genomes, putative effector arsenals and in vivo intra/extracellular proteomes https://t.co/ZLFF7kb8tC
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A more recent paper from the lab. FISHing in fungi: Visualisation of mushroom virus X in Agaricus bisporus mycelium by fluorescence in situ hybridisation. Work again from @ep_oconnor's PhD thesis with colleagues in @teagasc Ashtown and @eastwood_dan
https://t.co/VN9RTKSfJC
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Recent paper from the lab. Proteomic investigation of interhyphal interactions between strains of Agaricus bisporus. Work from @ep_oconnor's PhD thesis with colleagues in @teagasc Ashtown. https://t.co/pSTxOCji9Q
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I'm so glad to share our findings on how the addition of culture can improve our understanding of the human microbiome (more MAGs, better functional assignmnts). >6 yrs in the making, this story involved an amazing & dedicated group of scientists! 👩💻🧫👩🔬 https://t.co/jGFxI9hihk
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Super happy this is out in the world! Working on this specialised ribosome project, with the most excellent people (Tayah, @Ribo_Karl, @RNA_julie, @LabFontana, @Evol_Molly, @cgpmcc), has been one of my favourite parts of my PhD. Read and feedback away science twitter!
Specialisation of ribosomes in gonads through paralog-switching https://t.co/Nc77dds9A1
#bioRxiv
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Abstract submission for the Early Career conference are now open! 8 speaker slots are up for grabs- all topics accepted! Join us for scientific sessions, non-academic careers talks, professional development.....and key note speaker @MikeyJ on science and setting up his own lab.
We're pleased to announce that abstract submission for #ECMConf20 is now open! Find out more and submit your abstract on our website:
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my personal goals for 2020 are to start learning max/msp and to start a substack
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2010-2019: - got into maynooth - mother died - graduated, got a scholarship, started a phd - travelled outside ireland for the 1st time aged 23 - presented and published a bunch of stuff - moved to britain, submitted and defended thesis fine for the most part
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Fancy! Look who just made the University News. Congrats Sarah @SLarragy and @HazelDunbar_ on your awards for winning the #thesisin3 and flying the @MaynoothBiology flag so proudly.
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I'm proud to introduce my first bioRxiv paper on new software to find gene-gene co-occurrence in pangenomes. Written with Martin Rusilowicz & @jomcinerney. *Now on Bioconda!* Coinfinder: Detecting Significant Associations and Dissociations in Pangenomes https://t.co/moc9dC04nG
biorxiv.org
The accessory genes of prokaryote and eukaryote pangenomes accumulate by horizontal gene transfer, differential gene loss, and the effects of selection and drift. We have developed Coinfinder, a...
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here is a picture of me s̶c̶r̶e̶a̶m̶i̶n̶g̶ ̶i̶n̶t̶e̶r̶n̶a̶l̶l̶y̶ calmly presenting in front of an audience like i always do from approximately three years ago
Charley McCarthy from @MaynoothUni showing how different phylogenetic inference methods provide different results in Oomycetes #YSF2016
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PPanGGOLiN: Depicting microbial diversity via a Partitioned Pangenome Graph https://t.co/oTP5ZYrlLP
#biorxiv_bioinfo
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Society Champion @MicrobioGer wrote a blog on this August’s Biology Summer School which took place at the University of Maynooth @MU_bio_school.
microbiologysociety.org
During the week beginning 12 August 2019, a number of postgraduate students at Maynooth University ran a summer school for undergraduate students. Here, PhD student Gerard Sheehan discusses the...
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The New Tree of Eukaryotes, or what has changed in the last 15 years on the broad phylogeny of #protists and how we understand the tree now. I enjoyed a lot working with Alastair Simpson, @andrewjroger and @socialprotist on this review
Out online OA now! @fburki A Roger, M Brown & A Simpson review the remodelling of the Tree of Eukaryotic Life that has happened in since my undergrad...
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Genome Sequence of the Commercially Relevant Mushroom Agaricus bisporus var. bisporus ARP23 is out. Starting point for other exciting work from @ep_oconnor that we hope to publish soon. With our collaborators Sylvan-Somycel & @teagasc .@MU_Research
https://t.co/FYUgrR4T85
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