Anand Mayakonda ποΈ
@anand_mt
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Bioinformatics, genetics, and cancer genomics @dkfz. I also tweet #Rstats #dataviz @baseRgraphics creator @grabstractio
Heidelberg
Joined April 2009
How to convert research paper to slides in 1 minute? First, very quickly, why do we need to do this? β We often need to convert papers to slides β To present the paper in a conference β To present our research to our supervisors β To pitch our research for funding, and so
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This is amazing! If youβre looking for something to edit and organize your manuscript figures and panels - here it is. Completely free. π
It's finally time to announce what we've been working on. Welcome to the all new Affinity. Download now from https://t.co/d9OTjPlFwn - welcome to the start of creative freedom for all, totally free. Forever.
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Thrilled to announce our new paper, "Pipeline Olympics," is finally out in @NAR_OpenAccess! This was a massive effort, co-led with @pavlo_lutsik . We present a gold-standard benchmark for DNA methylation sequencing workflows. Check it out:
academic.oup.com
Abstract. DNA methylation is a widely studied epigenetic mark and a powerful biomarker of cell type, age, environmental exposures, and disease. Whole-genom
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π¨ The older the sperm, the more likely it is to cause autism Sequencing sperm using nearly error-free sequencing β measure % sperm carrying disease-causing mutations: 2% at age 30 β 4.5% at 70 Most were autism genes New paper in @Nature today π§΅
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#grabstract of the day Single Vaccine, Triple Protection. Scientists create a trivalent vaccine for three deadly brain viruses. @MarkSlifka
https://t.co/5qqWaPTcTb
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#grabstract of the day South American lung fish - Largest genome sequenced so far (30X larger than the human genome). https://t.co/7sb29JbfJD
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#maftools crossed over 4000 citations. Thank you all the users and constant feedback π @genomeresearch @dechen_lin @Bioconductor
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Introducing Grabstract. An AI tool that transforms your research texts into visuals. Please retweet and share π
Introducing grabstract: Transform complex scientific texts into clear, visual insights Just paste your abstract to create: π Graphical abstracts πΌοΈ Scientific posters π Mermaid diagrams π Infographics Try it for free: https://t.co/4h9jMEbN2T
#AcademicTwitter #SciComm
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Introducing grabstract: Transform complex scientific texts into clear, visual insights Just paste your abstract to create: π Graphical abstracts πΌοΈ Scientific posters π Mermaid diagrams π Infographics Try it for free: https://t.co/4h9jMEbN2T
#AcademicTwitter #SciComm
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Introducing figeno, my visualization software for (epi)genomicsπ§¬π¨. Supports many data types (bigwig, HiC, @nanopore data with base modifications, WGS...) and is easy to use with a GUI. Can visualize multiple regions (e.g. for breakpoints). https://t.co/S34McFH1ez
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Big thanks to all the Reviewers and NIDCR! We are looking for passionate researchers to work with us on HNSCC!
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Trackplot: a fast and minimal dependency R script for epigenomic enrichment plots https://t.co/rMtdqum7pl
https://t.co/GusXJOfXt8
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squaRify - A minimal, zero dependency package for drawing treemaps in R. Inspired by @laserson's squarify python implementation https://t.co/YjQEM02Nkx
#treemaps #rstats
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π ONLINE @NatureGenet π° Neuroblastoma arises in early fetal development and its evolutionary duration predicts outcome π§π½βπ€βπ§π» Verena KΓΆrber, Frank Westermann, Thomas HΓΆfer, and team β¬οΈ https://t.co/sd3hBjfQHN
#neuroblastoma @NatResCancer
nature.com
Nature Genetics - Somatic evolutionary analysis of neuroblastoma, a pediatric tumor, proposes a common fetal time of origin. Notably, high-risk tumors exhibit early genomic instability and...
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Itβs unbelievable how fast #echtvar by @brent_p is. Annotating a whole genome vcf (5m vars) with gnomad and internal allele frequencies takes < 5mins. π
github.com
using all the bits for echt rapid variant annotation and filtering - brentp/echtvar
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We are seeking computational postdocs for single-cell genomics in cancer @DKFZ and @KiTZ_HD Please help RT Thank you https://t.co/YLWphFg2pG
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Very excited to share our DNA methylome studies in esophageal cancer, a +5-year long journey with the amazing @benbfly and @yueyuan40704346, started @CSCancerCare and polished @CCMB_USC @uscnorris
https://t.co/BMJAOkqcnh
biorxiv.org
As one of the most common malignancies, esophageal cancer has two subtypes, squamous cell carcinoma (ESCC) and adenocarcinoma (EAC), arising from distinct cells-of-origin. However, distinguishing...
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