Víctor Sabanza Gil
@VictorSabanza
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PhD student @SchwallerGroup & @LPDC_EPFL at @EPFL 🇨🇭| AI for sustainable Chemistry ⚗️🖥️ MSc @gradcscunistra 🇫🇷 | BSc Chemistry @unirioja 🇪🇦 |
Lausanne, Switzerland
Joined September 2012
Making molecules is hard. How can we simplify the predicted synthesis routes of generated, property‑optimized small molecules? Our last work presents a framework that lets you "mix-and-match" multiple reaction constraints in the synthesis of your generated molecules.
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Out now! @pschwllr, @SchwallerGroup, @loic_roch, @VictorSabanza and colleagues provide guidelines and recommendations for when to use multi-fidelity Bayesian optimization over their single-fidelity counterparts https://t.co/vFsEPABa0Q 🔓 https://t.co/mdALeF6amU
nature.com
Nature Computational Science - Multi-fidelity Bayesian optimization methods are studied on molecular and material discovery tasks, and guidelines are provided to recommend cheaper and informative...
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Coauthors: @JeffGuo__ , @ZJoncev, @JLuterbacher, @pschwllr Thanks to @NCCR_Catalysis and @EPFL_ReO GlobaLeaders for the support!
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Using a generalist molecular generative model and reinforcement learning, we can address synthesizability multi-parameter optimization objectives without additional inductive biases. Code: https://t.co/jY6bWL1hNw Preprint:
arxiv.org
Synthesizability in small molecule generative design remains a bottleneck. Existing works that do consider synthesizability can output predicted synthesis routes for generated molecules. However,...
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We show the applicability of the framework in different use cases, related to drug discovery, industrial byproduct valorization and ultra-large-scale virtual screening.
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✅ Enforce the presence of specific reactions in the synthesis or only certain reactions ❌ Avoid specific reactions 🟢 Enforce the presence of certain building blocks in the synthesis ⬇️ Minimize synthesis route length
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Finally out! We have been working on a generative molecular design framework to allow steerable and granular control over synthetic routes for property-optimized molecules. ⚗️ 🖥️ Take a look below! 👇
Generate property-optimized small molecules with 𝘴𝘵𝘦𝘦𝘳𝘢𝘣𝘭𝘦 𝘢𝘯𝘥 𝘨𝘳𝘢𝘯𝘶𝘭𝘢𝘳 synthesizability control - allowing complete user-flexibility to impose various reaction constraints! Pre-print: https://t.co/k3XeQ2HaQz Code: https://t.co/5DkPdPZZpE (1/4)
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Hello from Singapore 🇸🇬! Thrilled to be at #ICLR2025 presenting our work on fragment-based drug discovery 🧩. We go beyond virtual screening with a generative, structure-aware approach. 📃 https://t.co/rH6SkSCPIY 🔗 https://t.co/H8BTPGLZp8 A thread 🧵👇
github.com
Structure-based fragment identification in latent space - rneeser/LatentFrag
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Check out the updated published version of our pre-print in @ChemicalScience! (1) *General-purpose* generative model + retrosynthesis model = design molecules with optimized properties with an *explicit* predicted synthesis pathway Paper: https://t.co/y0H2wovtlF (1/2)
Molecular generative models can *directly* optimize for synthesizability using retrosynthesis models! Check out initial results which can be an alternative to synthesizability-constrained generation Pre-print: https://t.co/3PFTuhuQRZ Code: https://t.co/dcpziGIL8U (1/2)
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🎉Our BoLudo paper is in @J_A_C_S! Bayesian Optimization for nanocrystaL strUcture Design Optimization (jk, it's BOjana & LUDO😂) We show you can optimize ANYTHING when put on the right scale - even nanocrystals with surface energy! Also we discovered a new Cu shape! See how👇
A Holistic Data-Driven Approach to Synthesis Predictions of Colloidal Nanocrystal Shapes | Journal of the American Chemical Society @lnce_epfl @SchwallerGroup @EPFL_CHEM_Tweet @EPFL_en
@NCCR_Catalysis @pschwllr
@6ojaHa
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🧵 Excellent showing from @SchwallerGroup at #NeurIPS2024! Our team received multiple spotlight presentations and acceptances across key AI+Science workshops, showcasing cutting-edge work in AI for chemistry and materials science.
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Atinary @ #NeurIPS in Vancouver this week🍁 Connect with our #AI #ML researchers @VictorSabanza & @shreyaspadhy. Our research paper on Multi-Fidelity Bayesian Optimization (MFBO) will be @ AIDrugX workshop on Dec 15! Full article: https://t.co/LmBvPgaPyl
@AtinaryTech #SDLabs
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1/ Starting material constrained synthesis planning is now possible using a general retrosynthesis algorithm *without* training a dedicated value network! Check-out our new paper, TangoStar. Preprint : https://t.co/hVG1r3f6fa
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📜 two very interesting, fundamental papers that shed light on when multi-fidelity (MF) Bayesian optimization (BayesOpt) is fruitful, compared to single-fidelity (SF) BayesOpt. https://t.co/qGnWzgYoTt (led by @loic_roch, @pschwllr) https://t.co/lX9VEUyTam (led by @JelfsChem)
arxiv.org
Multi fidelity Bayesian optimization (MFBO) leverages experimental and or computational data of varying quality and resource cost to optimize towards desired maxima cost effectively. This approach...
in our paper in Digital Discovery, we [within a computer simulation] demonstrate multi-fidelity Bayesian optimization (MFBO) for reducing the cost of materials discovery and orchestrating "self-driving" labs. https://t.co/iI9hiOrciR 🧪 problem setup we (1) wish to search a
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5/ This work is the result of my internship at @AtinaryTech , a collaboration between academia and industry working in an amazing team 🧑🎓 🤝🧑🔧. With the support of @NCCR_Catalysis and @EPFL_ReO GlobaLeaders program! 💪
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4/ If you want to see the results in detail, check the preprint: 📄: https://t.co/PFunVQva9H Our paper has also been accepted in the NeurIPS2024 AIDrugX workshop. 🧬💻
arxiv.org
Multi-fidelity Bayesian Optimization (MFBO) is a promising framework to speed up materials and molecular discovery as sources of information of different accuracies are at hand at increasing cost....
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3/ ⚗️ We applied our MFBO guidelines to real-world chemistry and materials benchmarks, where a cheap and informative approximation of the problem is available. The result? MFBO consistently reduced costs and improved outcomes compared to standard BO methods.
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2/ 🔍 Our study systematically explores the performance of MFBO across different scenarios, revealing that its success depends on the balance between cost and informativeness of low-fidelity data. When low-fidelity data is both inexpensive and informative, MFBO offers advantages.
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1/ 🧪💡 Curious about faster material & molecular discoveries? Multi-fidelity Bayesian Optimization (MFBO) is your friend! In this paper, we investigate when MFBO is truly effective compared to standard BO methods, helping to balance cost & accuracy in optimization campaigns.
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Just two weeks before we start Phase II of @NCCR_Catalysis! 🎉😍 Earlier this year, we gathered our members & supporters at @ZentrumPaulKlee to celebrate this incredible milestone! 🤩 We’re looking forward to another exciting four years 🥳
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