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Dr. Toby Baril Profile
Dr. Toby Baril

@Toby_Baril_Bio

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Postdoc Fellow @UniNeuchatel | #Transposon Analysis + Earl Grey | TE Evolutionary Dynamics + #PopGen | #FirstGen | 🇬🇧🇫🇷 | Ski | Hike | Bike

Neuchâtel, Switzerland
Joined December 2018
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@Toby_Baril_Bio
Dr. Toby Baril
2 years
Interested in using #EarlGrey for your #Transposon annotation, but not sure where to start? A tutorial with in-depth video is now on #TEHub @hub_te. Make sure to check out the other fantastic resources available whilst there! #Bioinformatics #Genomics.
tehub.org
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@Toby_Baril_Bio
Dr. Toby Baril
4 months
those linked to fungicide resistance. Big thanks to Guido Puccetti and Daniel Croll. Excited to see the ends results and to be able to share this!.
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@Toby_Baril_Bio
Dr. Toby Baril
4 months
… when populations arose, and we identified population-specific waves of TE activity as a significant source of variation among populations. TE activity surged over timescales as short as 25 years(!), and we find repeated instances of TEs with adaptive signatures, including….
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@Toby_Baril_Bio
Dr. Toby Baril
4 months
We generated a manually curated TE library (now in Dfam 3.9!) and detected ~3.2million TE insertions across ~1,900 individuals of Zymoseptoria tritici spanning populations across the globe. The coolest thing about this system is the ability to time TE expansions as we know….
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@Toby_Baril_Bio
Dr. Toby Baril
6 months
RT @RJABuggs: Four year postdoc position on diploidisation @Kewscience with the great Ilia Leitch.£40,926 - £42,945 per annum @BBSRC funded….
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@Toby_Baril_Bio
Dr. Toby Baril
7 months
RT @CcileLorrain: Dive into the massive genomes of plant pathogenic rust fungi! 🌿🍄.Our study reveals how ancestral & recent bursts of trans….
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biorxiv.org
Background Transposable elements (TEs) play a crucial role in genome evolution, influencing gene regulation, diversity, and genome architecture. Rust fungi of the order Pucciniales (Subphylum...
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@Toby_Baril_Bio
Dr. Toby Baril
10 months
RT @BMC_series: Warm welcome to our new #BMCGenomics Editorial Board Members @toby_baril_bio, @Gurjeet85572435 and @Nik_Palevich. We are lo….
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@Toby_Baril_Bio
Dr. Toby Baril
10 months
Big updates in Earl Grey v5!.- Create de novo TE libraries w/BEAT + skip annotation .- Annotation + defragmentation w/your own TE libraries.- Experimental: Improved Helitron detection w/HELIANO (@ZhenLi89973503).- notes: #Bioinformatics #Transposon #TEhub.
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github.com
Earl Grey: A fully automated TE curation and annotation pipeline - TobyBaril/EarlGrey
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@Toby_Baril_Bio
Dr. Toby Baril
10 months
RT @marianattestad: We just launched Circa 2.0!. Create beautiful circos plots in minutes, without a single line of code. You can try it fo….
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@Toby_Baril_Bio
Dr. Toby Baril
10 months
RT @mkankare6: So, so proud of this paper! TEs in cold adapted D. montana flies Amazing collaboration with ’Masse’….
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@Toby_Baril_Bio
Dr. Toby Baril
10 months
RT @INRAE_UMR_BF2I: Mariane P. Gomes, our visiting PhD student, presented her work on the XXIX Congresso Brasileiro de Entomologia e XIII C….
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@Toby_Baril_Bio
Dr. Toby Baril
1 year
RT @Hulk_Vogan: New Starship preprint is up🚀!We take a deep dive into the population dynamics of these giant #trans….
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@Toby_Baril_Bio
Dr. Toby Baril
1 year
RT @somia_sd: Our new tool panREPET, for detecting shared TE insertions among de novo whole-genome assemblies, is now available ! Let's see….
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