
Dr. Toby Baril
@Toby_Baril_Bio
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Postdoc Fellow @UniNeuchatel | #Transposon Analysis + Earl Grey | TE Evolutionary Dynamics + #PopGen | #FirstGen | 🇬🇧🇫🇷 | Ski | Hike | Bike
Neuchâtel, Switzerland
Joined December 2018
Interested in using #EarlGrey for your #Transposon annotation, but not sure where to start? A tutorial with in-depth video is now on #TEHub @hub_te. Make sure to check out the other fantastic resources available whilst there! #Bioinformatics #Genomics.
tehub.org
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Excited to share our latest preprint 🥳 .Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen.#bioinformatics #popgen #genomics #transposons #foodsecurity #research .
biorxiv.org
Transposable elements (TEs) can drive the evolution of host-pathogen interactions and gains in antimicrobial resistance. However, how adaptive TEs arise in populations and historical contingencies...
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RT @RJABuggs: Four year postdoc position on diploidisation @Kewscience with the great Ilia Leitch.£40,926 - £42,945 per annum @BBSRC funded….
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RT @CcileLorrain: Excited to share the published version of our paper: Thermal Adaptation in Worldwide Collections of a Major Fungal Pathog….
apsjournals.apsnet.org
Adaptation to new climates poses a significant challenge for plant pathogens during range expansion, highlighting the importance of understanding their response to climate to accurately forecast...
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RT @CcileLorrain: Dive into the massive genomes of plant pathogenic rust fungi! 🌿🍄.Our study reveals how ancestral & recent bursts of trans….
biorxiv.org
Background Transposable elements (TEs) play a crucial role in genome evolution, influencing gene regulation, diversity, and genome architecture. Rust fungi of the order Pucciniales (Subphylum...
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RT @Hulk_Vogan: We're hiring! If you're looking for a postdoc position and are interested in #fungal genomics and/or giant transposons plea….
uu.varbi.com
Postdoktor inom svampgenomik Vill du arbeta med systematisk biologi, med stöd av kompetenta och trevliga kollegor i en internationell miljö? Vill du ha en arbetsgivare som satsar på ett hållbart m
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RT @jordana_olive: It is out: "Analyses of transposable elements in arbuscular mycorrhizal fungi support evolutionary parallels with filame….
biorxiv.org
Transposable elements (TEs) are repetitive DNA sequences that excise or create copies that are inserted elsewhere in the genome. Their expansion shapes genome variability and evolution by impacting...
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RT @BMC_series: Warm welcome to our new #BMCGenomics Editorial Board Members @toby_baril_bio, @Gurjeet85572435 and @Nik_Palevich. We are lo….
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Big updates in Earl Grey v5!.- Create de novo TE libraries w/BEAT + skip annotation .- Annotation + defragmentation w/your own TE libraries.- Experimental: Improved Helitron detection w/HELIANO (@ZhenLi89973503).- notes: #Bioinformatics #Transposon #TEhub.
github.com
Earl Grey: A fully automated TE curation and annotation pipeline - TobyBaril/EarlGrey
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RT @GraemeKettles: Congratulations to @zymohyda on the first 1st author paper from his PhD. Just out in @MPMIjournal .ZymoSoups: A high-thr….
pubmed.ncbi.nlm.nih.gov
Septoria tritici blotch is caused by the fungus Zymoseptoria tritici and poses a major threat to wheat productivity. There are over 20 mapped loci in wheat that confer strong (gene-for-gene) resist...
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RT @marianattestad: We just launched Circa 2.0!. Create beautiful circos plots in minutes, without a single line of code. You can try it fo….
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RT @wagnercfagundes: 🚨Preprint alert🚨.Super happy to share the preprint of one of my PhD chapters in #Zymoseptoria now on BioRxiv: .“Host s….
biorxiv.org
Host-driven selection can be considered a strong driver of pathogen evolution. To successfully infect, colonize and complete their life cycle, plant pathogens are under constant selective pressures...
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RT @mkankare6: So, so proud of this paper! TEs in cold adapted D. montana flies Amazing collaboration with ’Masse’….
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RT @INRAE_UMR_BF2I: Mariane P. Gomes, our visiting PhD student, presented her work on the XXIX Congresso Brasileiro de Entomologia e XIII C….
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Anyone need to look for Helitrons? New tool #HELIANO makes this so much easier 🥳 excited to see this out!. #Transposons #Bioinformatics #Annotation #Genomics.
academic.oup.com
Abstract. Helitron-like elements (HLEs) are widespread eukaryotic DNA transposons employing a rolling-circle transposition mechanism. Despite their prevale
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RT @Hulk_Vogan: New Starship preprint is up🚀!We take a deep dive into the population dynamics of these giant #trans….
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RT @somia_sd: Our new tool panREPET, for detecting shared TE insertions among de novo whole-genome assemblies, is now available ! Let's see….
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RT @CcileLorrain: Discover how we identified genes associated with host adaptation in Zymoseptoria tritici. Our genome-host association ap….
researchsquare.com
Plant-pathogenic microbes, including the wheat fungal pathogen Zymoseptoria tritici, adapt to their host environment. In plants, genome-wide association studies (GWAS) have been extensively used to...
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