Soeren Strauss
@StraussSoe
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Researcher at MPIPZ Cologne (Tsiantis group), working at the interface of computer science and plant biology #MorphoGraphX #MorphoDynamX
Joined July 2018
Submitted and out as preprint: A Plausible Model of Phyllotaxis Patterning from a Single Apical Cell. 🪴🌱 Including 3D cell analysis & modeling #MorphoGraphX #MorphoDynamX #Physcomitrella #Phyllotaxis @RoederLab @RichardSmithLab
https://t.co/ZlG5WchAwG
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📢We are #hiring! 📢Please RT! @mpipz_cologne has a group leader position available in the broad area of Plant Development and Diversity. Apply now! 👉 https://t.co/AQOFMv1xIJ
#plantscience
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Happy 500th (Google) citation for the #MorphoGraphX v1.0 paper (in just under 10 years)🥳🎂 https://t.co/ChUCs4x9iw
@RichardSmithLab @RoutierLab
https://t.co/gAnMDwoJXQ
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If you ever wanted to have a try at plant biomechanics, but were not sure if the cost was worth it, here is a simple to build setup for under £500. https://t.co/p0NEWnHDTL
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We are #hiring ! In Miltos Tsiantis's project supervised @mpipz_cologne, the PhD student will work on identifying genes acting downstream of the RCO homeobox gene in leaf shape diversity. 🗓️application deadline Jan 5th, 2025 https://t.co/Tcw4vzHgM8
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Post-doc position available in my lab at SLCU. If you are passionate about plant development, live imaging and learning exciting tools like genetic mosaics and quantifying cellular growth please apply! https://t.co/sBdzhA3FZy
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We are #hiring ! In @hadrienoliveri project supervised @mpipz_cologne, the PhD student will explore continuum mechanical models of plant morphogenesis. 🗓️application deadline Jan 5th, 2025 https://t.co/Tcw4vzHgM8
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Excited to get years of PhD work published! Actin, cell packing, four-way junctions, and topological arrangement in Arabidopsis shoot apical meristem…Many thanks to all the authors and collaborators through this memorable journey.
New insights in how actin influences cell shape in plants from the Sampathkumar Lab & @RichardSmithLab. https://t.co/Nd25dmfxb1
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New insights in how actin influences cell shape in plants from the Sampathkumar Lab & @RichardSmithLab. https://t.co/Nd25dmfxb1
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Now out @CellReports ! The role of actin on wall growth and placement, cell shape, 4-way junctions and more 🥳
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I am happy to announce that I'll be starting my research group at @slcuplants this November! If you are enthusiastic about plant development and hormones in shaping form, please apply for the post-doc position advertised here:
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Now not a #preprint anymore and online @CurrentBiology
https://t.co/ScGIQC5Nke XinMin Li @neha_bhatia29 @Kierzkowski_Lab @RichardSmithLab @Adam_Runions
#Development highlighted our #preprint where Xinmin Li et al. are looking further into #leaf #heteroblasty and the role of SPL9 on leaf proximodistal symmetry and complexity. #Tsiantis lab @mpipz_cologne Highlight: https://t.co/C3tXG4zLME Preprint: https://t.co/Cl66B2Kd8X
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A deep learning-based toolkit for 3D nuclei segmentation and quantitative analysis in cellular and tissue context Read this Techniques and Resources Article by @athul_r_v, @tejasvinee_m, @qyucs, Kay Schneitz @PlantDevTUM and colleagues: https://t.co/jUVlbf7BpO
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Check also the leaf growth animations in the supplements made from confocal images using #MorphoGraphX
@neha_bhatia29 @Kierzkowski_Lab @RichardSmithLab @Adam_Runions
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#Development highlighted our #preprint where Xinmin Li et al. are looking further into #leaf #heteroblasty and the role of SPL9 on leaf proximodistal symmetry and complexity. #Tsiantis lab @mpipz_cologne Highlight: https://t.co/C3tXG4zLME Preprint: https://t.co/Cl66B2Kd8X
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Just out in Development. With our Go-Nuclear models, it is now possible to reliably 3D segment nuclei from 3D digital images. https://t.co/gJhvdrLKoN
https://t.co/EiR1VQeEnP
@athul_r_v, @tejasvinee_m, @qyucs, @StraussSoe, @WolnyAdrian, @lorenzocerrone, @RichardSmithLab
journals.biologists.com
Summary: This paper reports computational tools that allow versatile and accurate 3D nuclear segmentation in plant organs, enable the analysis of cell-nucleus geometric relationships, and improve the...
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Paper Alert! 🥳New publication out @PNASNews from the Tsiantis lab @mpipz_cologne about a genetic switch that turns plant leaves from simple shapes into complex shapes. 🌱🌿Congratulations! 👏👏 Learn more 👉 https://t.co/9cZPzTkKkz
https://t.co/Xg9KbefXS9
pnas.org
How tissue-level information encoded by fields of regulatory gene activity is translated into the patterns of cell polarity and growth that generat...
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I am thrilled to share our latest work on the CUC1/auxin module in cell polarity, patterned tissue growth, and shape diversity. Great collaboration with @o_DavidWilson_o and @neha_bhatia29 in Tsiantis lab.
A new study from Tsiantis lab @mpipz_cologne. We show that CUC1 acts as a polarity switch & provides instructive input into PIN1-auxin-based leaf marginal patterning that regulates leaf shape. Congratulations to all authors! These beautiful sectors.. https://t.co/tpjPBHIqvm
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3D nuclei segmentation using GoNuclear. @PlantDevTUM @tejasvinee_m @qyucs @StraussSoe
@WolnyAdrian @lorenzocerrone @FredHamprecht @RichardSmithLab #Anna_Kreshuk
https://t.co/l2ZIK44jU9
https://t.co/ZvUXNzSwqP
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How is time encoded in leaf morphogenesis? New paper alert @CurrentBiology from the Tsiantis group @mpipz_cologne Congratulations! 🥳👏 Learn more here 👉 https://t.co/2pOXbZOXBC
#plantscience
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