Soojung Yang Profile
Soojung Yang

@SoojungYang2

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Molecular simulations and AI for proteins! PhD student @ MIT @RGBLabMIT / website: https://t.co/xHAeCEclfm

Joined September 2020
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@SoojungYang2
Soojung Yang
2 days
@genbio_workshop @LucasPinede @junonam_ @RGBLabMIT @sihyun_yu Unfortunately both @LucasPinede and I won't be at ICML in person this year. But our poster will be at the workshop šŸ˜‚ Feel free to DM us or email our lead author (lucasp at about the paper! Preprint coming very soon, please tune in! (4/n, N=4).
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@SoojungYang2
Soojung Yang
2 days
@genbio_workshop @LucasPinede @junonam_ @RGBLabMIT At low noise, emulator scores ā‰ˆ physical forces. Even w/o alignment loss, emulator embeddings drift toward MLIP's. Inspired by @sihyun_yu’s REPA, we add a loss to encourage this — and training becomes faster & better. (3/n)
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@SoojungYang2
Soojung Yang
2 days
@genbio_workshop @LucasPinede @junonam_ @RGBLabMIT Boltzmann emulators can sample conformations cheaper than MD but are expensive to train. They need equilibrium data, which is very hard to get. But… MLIPs like MACE are trained on tons of noneq. data. What if we transfer knowledge from force models to generative models? (2/n).
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@SoojungYang2
Soojung Yang
2 days
šŸš€ Come check our poster at ICML @genbio_workshop!.We show that pretrained MLIPs can accelerate training of Boltzmann emulators — by aligning their internal representations. Coauthors @LucasPinede, @junonam_, @RGBLabMIT (1/n)
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@SoojungYang2
Soojung Yang
6 days
RT @satyanadella: Understanding protein motion is essential to understanding biology and advancing drug discovery. Today we’re introducing….
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@SoojungYang2
Soojung Yang
8 days
Happy to have contributed to this awesome project!.
@MSFTResearch
Microsoft Research
8 days
Today in the journal Science: BioEmu from Microsoft Research AI for Science. This generative deep learning method emulates protein equilibrium ensembles – key for understanding protein function at scale.
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@SoojungYang2
Soojung Yang
8 days
RT @FrankNoeBerlin: Huge shoutout to the outstanding team: Sarah Lewis, Tim @tmhmpl, JosĆ© @josejimlun, Michael Gastegger, Yu @YuuuXie, Andr….
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@SoojungYang2
Soojung Yang
8 days
RT @FrankNoeBerlin: BioEmu now published in @ScienceMagazine !! . What is BioEmu? Check out this video: .
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@SoojungYang2
Soojung Yang
9 days
RT @jacksonnn18: Our review paper is now live! šŸš€.We dive into how in-situ cryoET allows us to not only view proteins inside their native ce….
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@SoojungYang2
Soojung Yang
2 months
RT @ChoYehlin: šŸš€ Excited to release BoltzDesign1!. ✨ Now with LogMD-based trajectory visualization. šŸ”— Demo: Feedbac….
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@SoojungYang2
Soojung Yang
3 months
RT @ChoYehlin: I'll be attending @iclr_conf and the @gembioworkshop! 🧠✨If you're around and want to meet up or chat, feel free to DM me! 😊.
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@SoojungYang2
Soojung Yang
3 months
RT @HannesStaerk: New paper (and #ICLR2025 Oral :)): .ProtComposer: Compositional Protein Structure Generation with 3D Ellipsoids https://t….
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@SoojungYang2
Soojung Yang
3 months
RT @jonkhler: Spending the Easter days prepping for #ICLR2025 in #singapore šŸ˜šŸ¤©. If you want to meet/catch up on @cusp_ai #AI4Science #Machi….
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@SoojungYang2
Soojung Yang
3 months
Excited for #ICLR2025! I'll be there 4/25~ to organize the GEM Bio Workshop @gembioworkshop to bridge experiments and ML in bio 🄰 If you want to meet up on ML for proteins / dynamics / simulation, DM me! . I'm curious to learn about academic/industry opportunities out there!.
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@SoojungYang2
Soojung Yang
4 months
RT @ask1729: 1/ Machine learning force fields are hot right now šŸ”„: models are getting bigger + being trained on more data. But how do we ba….
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@SoojungYang2
Soojung Yang
5 months
RT @MSFTResearch: Meet BioEmu-1 from Microsoft Research. This deep learning model can generate thousands of protein structures per hour, un….
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@SoojungYang2
Soojung Yang
5 months
RT @FrankNoeBerlin: The BioEmu-1 model and inference code are now public under MIT license!!! . Please go ahead, play with it and let us kn….
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@SoojungYang2
Soojung Yang
6 months
RT @MSFTResearch: Microsoft researchers introduce MatterGen, a model that can discover new materials tailored to specific needs—like effici….
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@SoojungYang2
Soojung Yang
6 months
RT @HannesStaerk: Awesome paper!.BioEmu from MSR: Scalable emulation of protein equilibrium ensembles with generative deep learning https:/….
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@SoojungYang2
Soojung Yang
7 months
RT @DhimanRay16: Just out in @JChemPhys! Integrating Weighted Ensemble (@WestpaSoftware) with OPES-Flooding for accurate and efficient calc….
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