Soham Mukhopadhyay
@SohamBio
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Plant Microbe Interaction, Genomics, Aquascaping | Creator of https://t.co/BI10lkHdvp
College Park, Maryland
Joined March 2009
Happy to see the preprint find a home @elife! š„³ .Thank you to my coauthors @asimjaved777 @JiaxuWu6 , especially @edelplopez , for the continuous support and encouragement. Followup results from thia study coming soon!.
New Preprint šØ Using AF2, we predicted the 3D structures of the gall-forming plasmodiophorid, oomycete and fungi secretome to investigate - 1. common and unique folds associated with a lifestyle, 2. SUSS effector families.
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RT @kavi_deniz: Can't keep up with all the new computational tools? Here are the top ones to know for biology, chemistry and informatics. Bā¦.
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RT @InterProDB: InterProScan 6 (beta) is here š.A Nextflow-powered, containerised overhaul for scalable, reproducible protein annotationādeā¦.
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Aquatic plants are beautiful! Here you see pure oxygen bubbles being produced during photosynthesis
āMy passion for plant science began with aquascaping, cultivating aquatic plants in aquariums by carefully managing light, fertilizers, and CO2 levels.ā . #WeAreASPB
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RT @Edel_PLopez: Bravo @SohamBio š.More soon! š See our study here:
academic.oup.com
Resistance gene enrichment sequencing produces a complete repertoire of nucleotide-binding leucine-rich repeat receptors for Brassica napus, overcoming pri
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Thanks @PlantPhys!! Cheers for highlighting the hobby of Aquascaping. Pic of one of my old tanks
āMy passion for plant science began with aquascaping, cultivating aquatic plants in aquariums by carefully managing light, fertilizers, and CO2 levels.ā . #WeAreASPB
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RT @nataliagupa: I am thrilled to share the 2nd chapter of my PhD with @ADSteinbrenner. In collaboration with @TiszaPatrick, we demonstrateā¦.
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RT @Edel_PLopez: š¢ PhD Position #2.Morphological Changes in Plant Roots Induced by Plasmodiophorid Effectors š§¬. We are inviting applicationā¦.
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RT @wenboEffector: Excited to preprint work mainly by former postdocs Li Feng, Yingnan Hou @Cerhou, and the phylogenomics genius @amiralitoā¦.
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RT @TerezaYan: First Ma lab #GMI paper is now online! Itās a mini-review on insect-induced plant #galls ātheir coolness and research potentā¦.
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RT @YuSugiharaY: š Exciting news during #2025ISMPMI .Our AlphaFold 3 sensor vs helper NLR paper is now published in @NewPhyt!. Big thanks tā¦.
nph.onlinelibrary.wiley.com
Click on the article title to read more.
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RT @Steve__Kelly: It has been a whileā¦ but an updated, faster & more accurate version of OrthoFinder is now out! . Scales to thousands ofā¦.
biorxiv.org
Here, we present a major advance of the OrthoFinder method. This extends OrthoFinderās high accuracy comparative genomic framework to provide substantially enhanced scalability and accuracy. Specif...
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RT @snoeck_simon: Shedding light on the structure-function mechanisms of LRR-RPs. Our research merges #AlphaFold3, years of literature andā¦.
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RT @Tolga_Bzkrt: Fascinating effector mechanism to undermine host immunity. Plus a very cool effector šÆ: TOL9a š.
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RT @mpcontreras4: AVRcap1b is a multidomain RXLR LWY effector, featuring one WY domain and six LWY domains. This arrangement is similar toā¦.
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RT @hgpennington: In 2023 ago I painted a wheat stem rust teleutosorus (pustule). My painting won the āMagnifiedā section of the 2023 @plaā¦.
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Amazing results! During my PhD, I found the lateral root assiociated genes to be constantly enriched in the transcriptome data from another gall forming pathogen Plasmodiophora brassicae.
biorxiv.org
Biotrophic plant pathogens secrete effector molecules to redirect and exploit endogenous signaling and developmental pathways in their favor. The biotrophic fungus Ustilago maydis causes galls on all...
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RT @NaturePlants: New Article: "A conserved Phytophthora apoplastic trypsin-like serine protease targets the receptor-like kinase BAK1 to dā¦.
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